Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 RPS4BYHR203C 786 nt4.38□□□□□ -1.71
UBP3Q01477 YJL169WYJL169W 369 nt4.38□□□□□ -1.71
UBP3Q01477 RPL6BYLR448W 531 nt4.38□□□□□ -1.71 RIP-Chip
UBP3Q01477 YML116W-AYML116W-A 303 nt4.38□□□□□ -1.71
UBP3Q01477 AAR2YBL074C 1068 nt4.38□□□□□ -1.71
UBP3Q01477 CMD1YBR109C 444 nt4.38□□□□□ -1.71
UBP3Q01477 SWC4YGR002C 1431 nt4.38□□□□□ -1.71
UBP3Q01477 ARF1YDL192W 546 nt4.37□□□□□ -1.71
UBP3Q01477 GRX2YDR513W 432 nt4.37□□□□□ -1.71
UBP3Q01477 DPH1YIL103W 1278 nt4.37□□□□□ -1.71
UBP3Q01477 INO4YOL108C 456 nt4.37□□□□□ -1.71
UBP3Q01477 SRL1YOR247W 633 nt4.37□□□□□ -1.71 RIP-Chip
UBP3Q01477 YPR059CYPR059C 387 nt4.37□□□□□ -1.71
UBP3Q01477 ROX1YPR065W 1107 nt4.37□□□□□ -1.71
UBP3Q01477 PTA1YAL043C 2358 nt4.37□□□□□ -1.71 RIP-Chip
UBP3Q01477 VHS3YOR054C 2025 nt4.37□□□□□ -1.71 RIP-Chip
UBP3Q01477 RIM4YHL024W 2142 nt4.37□□□□□ -1.71
UBP3Q01477 HDA2YDR295C 2025 nt4.36□□□□□ -1.71 RIP-Chip
UBP3Q01477 NDC80YIL144W 2076 nt4.36□□□□□ -1.71 RIP-Chip
UBP3Q01477 LCB5YLR260W 2064 nt4.36□□□□□ -1.71
UBP3Q01477 SMB1YER029C 591 nt4.36□□□□□ -1.71 RIP-Chip
UBP3Q01477 tL(UAG)JtL(UAG)J 82 nt4.36□□□□□ -1.71
UBP3Q01477 tL(UAG)L1tL(UAG)L1 82 nt4.36□□□□□ -1.71
UBP3Q01477 tL(UAG)L2tL(UAG)L2 82 nt4.36□□□□□ -1.71
UBP3Q01477 BIO2YGR286C 1128 nt4.36□□□□□ -1.71 RIP-Chip
UBP3Q01477 VMA10YHR039C-A 345 nt4.36□□□□□ -1.71 RIP-Chip
UBP3Q01477 VPS63YLR261C 327 nt4.36□□□□□ -1.71
UBP3Q01477 PDP3YLR455W 915 nt4.36□□□□□ -1.71
UBP3Q01477 ASC1YMR116C 960 nt4.36□□□□□ -1.71
UBP3Q01477 PDR17YNL264C 1053 nt4.36□□□□□ -1.71
UBP3Q01477 YBR141W-AYBR141W-A 96 nt4.36□□□□□ -1.71
UBP3Q01477 AIM4YBR194W 372 nt4.36□□□□□ -1.71
UBP3Q01477 TAF6YGL112C 1551 nt4.36□□□□□ -1.71
UBP3Q01477 DAL5YJR152W 1632 nt4.35□□□□□ -1.71
UBP3Q01477 ULS1YOR191W 4860 nt4.35□□□□□ -1.71 RIP-Chip
UBP3Q01477 SLD5YDR489W 885 nt4.35□□□□□ -1.71
UBP3Q01477 YFL015CYFL015C 495 nt4.35□□□□□ -1.71
UBP3Q01477 YGR017WYGR017W 894 nt4.35□□□□□ -1.71
UBP3Q01477 YOL114CYOL114C 609 nt4.35□□□□□ -1.71
UBP3Q01477 YOR282WYOR282W 321 nt4.35□□□□□ -1.71
UBP3Q01477 YPL107WYPL107W 747 nt4.35□□□□□ -1.71
UBP3Q01477 PAM1YDR251W 2493 nt4.35□□□□□ -1.71
UBP3Q01477 RPN3YER021W 1572 nt4.35□□□□□ -1.71
UBP3Q01477 BEM4YPL161C 1902 nt4.34□□□□□ -1.71
UBP3Q01477 SPT23YKL020C 3249 nt4.34□□□□□ -1.71
UBP3Q01477 SPC19YDR201W 498 nt4.34□□□□□ -1.71
UBP3Q01477 YIR020C-BYIR020C-B 735 nt4.34□□□□□ -1.71
UBP3Q01477 YKL118WYKL118W 312 nt4.34□□□□□ -1.71
UBP3Q01477 HRD1YOL013C 1656 nt4.34□□□□□ -1.71
UBP3Q01477 SEC2YNL272C 2280 nt4.34□□□□□ -1.72
UBP3Q01477 SRO7YPR032W 3102 nt4.33□□□□□ -1.72 RIP-Chip
UBP3Q01477 TAF7YMR227C 1773 nt4.33□□□□□ -1.72
UBP3Q01477 TDA1YMR291W 1761 nt4.33□□□□□ -1.72 RIP-Chip
UBP3Q01477 snR59snR59 78 nt4.33□□□□□ -1.72
UBP3Q01477 FRQ1YDR373W 573 nt4.33□□□□□ -1.72
UBP3Q01477 YKL069WYKL069W 543 nt4.33□□□□□ -1.72
UBP3Q01477 YNL043CYNL043C 321 nt4.33□□□□□ -1.72
UBP3Q01477 RIO2YNL207W 1278 nt4.33□□□□□ -1.72 RIP-Chip
UBP3Q01477 YOR331CYOR331C 558 nt4.33□□□□□ -1.72
UBP3Q01477 TPA1YER049W 1935 nt4.33□□□□□ -1.72 RIP-Chip
UBP3Q01477 GRS2YPR081C 1857 nt4.32□□□□□ -1.72 RIP-Chip
UBP3Q01477 ARG5,6YER069W 2592 nt4.32□□□□□ -1.72 RIP-Chip
UBP3Q01477 SSH1YBR283C 1473 nt4.32□□□□□ -1.72
UBP3Q01477 YBR012W-AYBR012W-A 1323 nt4.32□□□□□ -1.72
UBP3Q01477 YOR142W-AYOR142W-A 1323 nt4.32□□□□□ -1.72
UBP3Q01477 YPR158W-AYPR158W-A 1323 nt4.32□□□□□ -1.72
UBP3Q01477 HMRA2YCR096C 360 nt4.32□□□□□ -1.72
UBP3Q01477 YGL039WYGL039W 1047 nt4.32□□□□□ -1.72
UBP3Q01477 CRG1YHR209W 876 nt4.32□□□□□ -1.72
UBP3Q01477 MRPL31YKL138C 396 nt4.32□□□□□ -1.72
UBP3Q01477 YLR416CYLR416C 399 nt4.32□□□□□ -1.72
UBP3Q01477 YMR031W-AYMR031W-A 327 nt4.32□□□□□ -1.72
UBP3Q01477 YOL134CYOL134C 390 nt4.32□□□□□ -1.72
UBP3Q01477 HAA1YPR008W 2085 nt4.32□□□□□ -1.72
UBP3Q01477 YJR098CYJR098C 1971 nt4.32□□□□□ -1.72
UBP3Q01477 SHE4YOR035C 2370 nt4.32□□□□□ -1.72
UBP3Q01477 SSE2YBR169C 2082 nt4.31□□□□□ -1.72 RIP-Chip
UBP3Q01477 NCS2YNL119W 1482 nt4.31□□□□□ -1.72
UBP3Q01477 FLO10YKR102W 3510 nt4.31□□□□□ -1.72
UBP3Q01477 YDL071CYDL071C 375 nt4.31□□□□□ -1.72
UBP3Q01477 YDL094CYDL094C 510 nt4.31□□□□□ -1.72
UBP3Q01477 SEC53YFL045C 765 nt4.31□□□□□ -1.72 RIP-Chip
UBP3Q01477 PAU13YHL046C 363 nt4.31□□□□□ -1.72
UBP3Q01477 ECM4YKR076W 1113 nt4.31□□□□□ -1.72
UBP3Q01477 VAM10YOR068C 345 nt4.31□□□□□ -1.72
UBP3Q01477 HHF1YBR009C 312 nt4.31□□□□□ -1.72 RIP-Chip
UBP3Q01477 BAR1YIL015W 1764 nt4.31□□□□□ -1.72
UBP3Q01477 FAS2YPL231W 5664 nt4.3□□□□□ -1.72
UBP3Q01477 snR8snR8 190 nt4.3□□□□□ -1.72
UBP3Q01477 CPR5YDR304C 678 nt4.3□□□□□ -1.72
UBP3Q01477 GTT2YLL060C 702 nt4.3□□□□□ -1.72
UBP3Q01477 CDC55YGL190C 1581 nt4.3□□□□□ -1.72 RIP-Chip
UBP3Q01477 ARG2YJL071W 1725 nt4.29□□□□□ -1.72 RIP-Chip
UBP3Q01477 ECM22YLR228C 2445 nt4.29□□□□□ -1.72 RIP-Chip
UBP3Q01477 YCR090CYCR090C 549 nt4.29□□□□□ -1.72 RIP-Chip
UBP3Q01477 FMN1YDR236C 657 nt4.29□□□□□ -1.72
UBP3Q01477 PEX4YGR133W 552 nt4.29□□□□□ -1.72
UBP3Q01477 YJR079WYJR079W 330 nt4.29□□□□□ -1.72
UBP3Q01477 RIM9YMR063W 720 nt4.29□□□□□ -1.72
UBP3Q01477 GRE2YOL151W 1029 nt4.29□□□□□ -1.72
Retrieved 100 of 7,029 protein–RNA pairs in 71.9 ms