Protein–RNA interactions for Protein: P62310

LSM3, U6 snRNA-associated Sm-like protein LSm3, humanhuman

Known RBP Predictions only

Length 102 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM3P62310 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM3P62310 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM3P62310 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM3P62310 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM3P62310 OR7E47P-201ENST00000546390 1422 ntBASIC18.77■□□□□ 0.6
LSM3P62310 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM3P62310 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM3P62310 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC18.77■□□□□ 0.6
LSM3P62310 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
LSM3P62310 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC18.77■□□□□ 0.6
LSM3P62310 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM3P62310 AC019171.1-201ENST00000601251 1056 ntBASIC18.77■□□□□ 0.6
LSM3P62310 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.77■□□□□ 0.6
LSM3P62310 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.59
LSM3P62310 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
LSM3P62310 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
LSM3P62310 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
LSM3P62310 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.59
LSM3P62310 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.77■□□□□ 0.59
LSM3P62310 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.59
LSM3P62310 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.77■□□□□ 0.59
LSM3P62310 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
LSM3P62310 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.76■□□□□ 0.59
LSM3P62310 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
LSM3P62310 HYI-213ENST00000583037 1322 ntTSL 5 BASIC18.76■□□□□ 0.59
LSM3P62310 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM3P62310 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM3P62310 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM3P62310 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM3P62310 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.76■□□□□ 0.59
LSM3P62310 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC18.76■□□□□ 0.59
LSM3P62310 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.76■□□□□ 0.59
LSM3P62310 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC18.76■□□□□ 0.59
LSM3P62310 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC18.76■□□□□ 0.59
LSM3P62310 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM3P62310 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
LSM3P62310 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.76■□□□□ 0.59
LSM3P62310 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM3P62310 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
LSM3P62310 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM3P62310 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
LSM3P62310 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
LSM3P62310 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.75■□□□□ 0.59
LSM3P62310 ERF-202ENST00000440177 2032 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM3P62310 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
LSM3P62310 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM3P62310 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC18.75■□□□□ 0.59
LSM3P62310 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.75■□□□□ 0.59
LSM3P62310 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.75■□□□□ 0.59
LSM3P62310 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
LSM3P62310 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.74■□□□□ 0.59
LSM3P62310 AL512408.1-201ENST00000569378 2000 ntBASIC18.74■□□□□ 0.59
LSM3P62310 DET1-207ENST00000564406 2315 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM3P62310 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM3P62310 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM3P62310 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
LSM3P62310 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 KRT18P24-201ENST00000344739 1156 ntBASIC18.74■□□□□ 0.59
LSM3P62310 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
LSM3P62310 NKILA-201ENST00000613231 537 ntTSL 4 BASIC18.74■□□□□ 0.59
LSM3P62310 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC18.74■□□□□ 0.59
LSM3P62310 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LSM3P62310 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
LSM3P62310 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.73■□□□□ 0.59
LSM3P62310 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.73■□□□□ 0.59
LSM3P62310 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.73■□□□□ 0.59
LSM3P62310 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.73■□□□□ 0.59
LSM3P62310 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LSM3P62310 MTX2-204ENST00000443241 799 ntTSL 3 BASIC18.73■□□□□ 0.59
LSM3P62310 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
LSM3P62310 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms