Protein–RNA interactions for Protein: P60228

EIF3E, Eukaryotic translation initiation factor 3 subunit E, humanhuman

Known RBP Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EIF3EP60228 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
EIF3EP60228 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
EIF3EP60228 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
EIF3EP60228 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
EIF3EP60228 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.5■■□□□ 1.03
EIF3EP60228 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
EIF3EP60228 IRS3P-201ENST00000223076 1006 ntBASIC21.5■■□□□ 1.03
EIF3EP60228 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.5■■□□□ 1.03
EIF3EP60228 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.5■■□□□ 1.03
EIF3EP60228 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
EIF3EP60228 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
EIF3EP60228 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
EIF3EP60228 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 AC121338.2-201ENST00000622535 1744 ntBASIC21.49■■□□□ 1.03
EIF3EP60228 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.49■■□□□ 1.03
EIF3EP60228 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
EIF3EP60228 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.49■■□□□ 1.03
EIF3EP60228 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC21.49■■□□□ 1.03
EIF3EP60228 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.49■■□□□ 1.03
EIF3EP60228 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
EIF3EP60228 AC061975.6-201ENST00000579045 1553 ntBASIC21.48■■□□□ 1.03
EIF3EP60228 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.48■■□□□ 1.03
EIF3EP60228 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.48■■□□□ 1.03
EIF3EP60228 ERF-202ENST00000440177 2032 ntTSL 2 BASIC21.48■■□□□ 1.03
EIF3EP60228 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
EIF3EP60228 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
EIF3EP60228 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
EIF3EP60228 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
EIF3EP60228 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
EIF3EP60228 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
EIF3EP60228 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
EIF3EP60228 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.48■■□□□ 1.03
EIF3EP60228 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC21.47■■□□□ 1.03
EIF3EP60228 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
EIF3EP60228 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
EIF3EP60228 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
EIF3EP60228 AC079140.4-201ENST00000507448 529 ntBASIC21.47■■□□□ 1.03
EIF3EP60228 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.47■■□□□ 1.03
EIF3EP60228 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.47■■□□□ 1.03
EIF3EP60228 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.47■■□□□ 1.03
EIF3EP60228 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
EIF3EP60228 FEM1AP1-201ENST00000431297 1995 ntBASIC21.47■■□□□ 1.03
EIF3EP60228 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
EIF3EP60228 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
EIF3EP60228 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
EIF3EP60228 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.46■■□□□ 1.03
EIF3EP60228 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
EIF3EP60228 LINC01521-201ENST00000504184 1943 ntBASIC21.46■■□□□ 1.03
EIF3EP60228 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.46■■□□□ 1.03
EIF3EP60228 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
EIF3EP60228 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
EIF3EP60228 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.46■■□□□ 1.03
EIF3EP60228 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
EIF3EP60228 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
EIF3EP60228 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
EIF3EP60228 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
EIF3EP60228 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.46■■□□□ 1.03
EIF3EP60228 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.46■■□□□ 1.03
EIF3EP60228 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
EIF3EP60228 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC21.46■■□□□ 1.03
EIF3EP60228 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.03
EIF3EP60228 AP004607.4-201ENST00000530158 1459 ntBASIC21.45■■□□□ 1.03
EIF3EP60228 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
EIF3EP60228 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
EIF3EP60228 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
EIF3EP60228 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
EIF3EP60228 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
EIF3EP60228 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
EIF3EP60228 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.45■■□□□ 1.02
EIF3EP60228 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
EIF3EP60228 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC21.45■■□□□ 1.02
EIF3EP60228 LINC01006-201ENST00000333319 2292 ntBASIC21.45■■□□□ 1.02
EIF3EP60228 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
EIF3EP60228 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
EIF3EP60228 KRT87P-202ENST00000534226 1464 ntBASIC21.45■■□□□ 1.02
EIF3EP60228 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
EIF3EP60228 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.44■■□□□ 1.02
EIF3EP60228 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
EIF3EP60228 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
EIF3EP60228 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
EIF3EP60228 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
EIF3EP60228 MIR638-201ENST00000385237 100 ntBASIC21.44■■□□□ 1.02
EIF3EP60228 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC21.44■■□□□ 1.02
EIF3EP60228 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
EIF3EP60228 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
EIF3EP60228 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC21.44■■□□□ 1.02
EIF3EP60228 AC073130.3-201ENST00000624389 2278 ntBASIC21.44■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms