Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.77■■□□□ 1.08
HDAC4P56524 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.77■■□□□ 1.08
HDAC4P56524 KRT16P2-201ENST00000414673 1423 ntBASIC21.77■■□□□ 1.08
HDAC4P56524 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC4P56524 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.77■■□□□ 1.08
HDAC4P56524 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
HDAC4P56524 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC4P56524 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
HDAC4P56524 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.77■■□□□ 1.07
HDAC4P56524 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
HDAC4P56524 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 MIR935-201ENST00000401179 91 ntBASIC21.76■■□□□ 1.07
HDAC4P56524 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC4P56524 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC4P56524 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.76■■□□□ 1.07
HDAC4P56524 MIR5787-201ENST00000611784 55 ntBASIC21.76■■□□□ 1.07
HDAC4P56524 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
HDAC4P56524 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.76■■□□□ 1.07
HDAC4P56524 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
HDAC4P56524 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
HDAC4P56524 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.75■■□□□ 1.07
HDAC4P56524 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HDAC4P56524 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.75■■□□□ 1.07
HDAC4P56524 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC4P56524 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
HDAC4P56524 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC4P56524 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.75■■□□□ 1.07
HDAC4P56524 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.75■■□□□ 1.07
HDAC4P56524 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.75■■□□□ 1.07
HDAC4P56524 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.75■■□□□ 1.07
HDAC4P56524 AL162430.1-201ENST00000480705 870 ntBASIC21.75■■□□□ 1.07
HDAC4P56524 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.75■■□□□ 1.07
HDAC4P56524 KRT18P20-201ENST00000548986 1279 ntBASIC21.75■■□□□ 1.07
HDAC4P56524 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC4P56524 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC4P56524 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
HDAC4P56524 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HDAC4P56524 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC4P56524 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
HDAC4P56524 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.74■■□□□ 1.07
HDAC4P56524 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC4P56524 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC4P56524 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
HDAC4P56524 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.74■■□□□ 1.07
HDAC4P56524 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.74■■□□□ 1.07
HDAC4P56524 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.74■■□□□ 1.07
HDAC4P56524 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC4P56524 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
HDAC4P56524 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC21.73■■□□□ 1.07
HDAC4P56524 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.73■■□□□ 1.07
HDAC4P56524 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.73■■□□□ 1.07
HDAC4P56524 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC21.73■■□□□ 1.07
HDAC4P56524 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC21.73■■□□□ 1.07
HDAC4P56524 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
HDAC4P56524 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.73■■□□□ 1.07
HDAC4P56524 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HDAC4P56524 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC4P56524 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.72■■□□□ 1.07
HDAC4P56524 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC4P56524 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.72■■□□□ 1.07
HDAC4P56524 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.72■■□□□ 1.07
HDAC4P56524 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC4P56524 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.72■■□□□ 1.07
HDAC4P56524 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.72■■□□□ 1.07
HDAC4P56524 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC4P56524 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.72■■□□□ 1.07
HDAC4P56524 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.72■■□□□ 1.07
HDAC4P56524 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC4P56524 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC4P56524 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HDAC4P56524 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HDAC4P56524 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.71■■□□□ 1.07
HDAC4P56524 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HDAC4P56524 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.71■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms