Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGCS2P54868 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
HMGCS2P54868 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC24.21■■□□□ 1.47
HMGCS2P54868 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
HMGCS2P54868 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
HMGCS2P54868 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC24.21■■□□□ 1.47
HMGCS2P54868 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC24.21■■□□□ 1.47
HMGCS2P54868 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC24.21■■□□□ 1.47
HMGCS2P54868 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC24.21■■□□□ 1.47
HMGCS2P54868 USP36-216ENST00000589424 970 ntTSL 5 BASIC24.21■■□□□ 1.47
HMGCS2P54868 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
HMGCS2P54868 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC24.21■■□□□ 1.47
HMGCS2P54868 CASK-201ENST00000378154 2494 ntTSL 5 BASIC24.21■■□□□ 1.47
HMGCS2P54868 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC24.2■■□□□ 1.47
HMGCS2P54868 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
HMGCS2P54868 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
HMGCS2P54868 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC24.2■■□□□ 1.46
HMGCS2P54868 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC24.2■■□□□ 1.46
HMGCS2P54868 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC24.2■■□□□ 1.46
HMGCS2P54868 KRT18P68-201ENST00000392293 1000 ntBASIC24.2■■□□□ 1.46
HMGCS2P54868 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
HMGCS2P54868 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
HMGCS2P54868 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC24.2■■□□□ 1.46
HMGCS2P54868 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
HMGCS2P54868 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
HMGCS2P54868 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC24.2■■□□□ 1.46
HMGCS2P54868 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC24.19■■□□□ 1.46
HMGCS2P54868 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGCS2P54868 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGCS2P54868 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
HMGCS2P54868 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGCS2P54868 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 PTPA-214ENST00000423100 988 ntTSL 2 BASIC24.19■■□□□ 1.46
HMGCS2P54868 AC007322.3-201ENST00000426526 701 ntBASIC24.19■■□□□ 1.46
HMGCS2P54868 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC24.19■■□□□ 1.46
HMGCS2P54868 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC24.19■■□□□ 1.46
HMGCS2P54868 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC24.19■■□□□ 1.46
HMGCS2P54868 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC24.19■■□□□ 1.46
HMGCS2P54868 RHOD-202ENST00000532559 538 ntTSL 3 BASIC24.19■■□□□ 1.46
HMGCS2P54868 PNMA6B-201ENST00000538162 1200 ntBASIC24.19■■□□□ 1.46
HMGCS2P54868 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC24.19■■□□□ 1.46
HMGCS2P54868 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGCS2P54868 AL359736.2-201ENST00000621992 437 ntBASIC24.19■■□□□ 1.46
HMGCS2P54868 STX5-203ENST00000394690 1568 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGCS2P54868 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC24.19■■□□□ 1.46
HMGCS2P54868 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC24.19■■□□□ 1.46
HMGCS2P54868 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
HMGCS2P54868 GCK-205ENST00000437084 1385 ntTSL 5 BASIC24.18■■□□□ 1.46
HMGCS2P54868 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGCS2P54868 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC24.18■■□□□ 1.46
HMGCS2P54868 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGCS2P54868 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGCS2P54868 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
HMGCS2P54868 SAPCD2P1-201ENST00000395413 1184 ntBASIC24.18■■□□□ 1.46
HMGCS2P54868 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC24.18■■□□□ 1.46
HMGCS2P54868 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGCS2P54868 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.18■■□□□ 1.46
HMGCS2P54868 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
HMGCS2P54868 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC24.18■■□□□ 1.46
HMGCS2P54868 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC24.18■■□□□ 1.46
HMGCS2P54868 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC24.17■■□□□ 1.46
HMGCS2P54868 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC24.17■■□□□ 1.46
HMGCS2P54868 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC24.17■■□□□ 1.46
HMGCS2P54868 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC24.17■■□□□ 1.46
HMGCS2P54868 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC24.17■■□□□ 1.46
HMGCS2P54868 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGCS2P54868 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGCS2P54868 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HMGCS2P54868 AC008550.1-201ENST00000511500 884 ntBASIC24.17■■□□□ 1.46
HMGCS2P54868 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGCS2P54868 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGCS2P54868 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC24.17■■□□□ 1.46
HMGCS2P54868 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC24.17■■□□□ 1.46
HMGCS2P54868 AC092368.3-202ENST00000574180 1591 ntBASIC24.16■■□□□ 1.46
HMGCS2P54868 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
HMGCS2P54868 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC24.16■■□□□ 1.46
HMGCS2P54868 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC24.16■■□□□ 1.46
HMGCS2P54868 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGCS2P54868 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC24.16■■□□□ 1.46
HMGCS2P54868 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC24.16■■□□□ 1.46
HMGCS2P54868 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC24.16■■□□□ 1.46
HMGCS2P54868 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC24.16■■□□□ 1.46
HMGCS2P54868 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC24.16■■□□□ 1.46
HMGCS2P54868 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
HMGCS2P54868 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
HMGCS2P54868 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC24.16■■□□□ 1.46
HMGCS2P54868 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
HMGCS2P54868 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGCS2P54868 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGCS2P54868 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGCS2P54868 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
HMGCS2P54868 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
HMGCS2P54868 MFF-205ENST00000354503 1085 ntTSL 2 BASIC24.15■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms