Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC29.18■■■□□ 2.26
MSH6P52701 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC29.17■■■□□ 2.26
MSH6P52701 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC29.17■■■□□ 2.26
MSH6P52701 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
MSH6P52701 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC29.17■■■□□ 2.26
MSH6P52701 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
MSH6P52701 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
MSH6P52701 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
MSH6P52701 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC29.16■■■□□ 2.26
MSH6P52701 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC29.16■■■□□ 2.26
MSH6P52701 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC29.16■■■□□ 2.26
MSH6P52701 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
MSH6P52701 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
MSH6P52701 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC29.16■■■□□ 2.26
MSH6P52701 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
MSH6P52701 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
MSH6P52701 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
MSH6P52701 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
MSH6P52701 AC245052.3-201ENST00000450182 901 ntBASIC29.15■■■□□ 2.26
MSH6P52701 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC29.15■■■□□ 2.26
MSH6P52701 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC29.15■■■□□ 2.26
MSH6P52701 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
MSH6P52701 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
MSH6P52701 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
MSH6P52701 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC29.15■■■□□ 2.26
MSH6P52701 NXN-202ENST00000537628 1340 ntTSL 3 BASIC29.15■■■□□ 2.26
MSH6P52701 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
MSH6P52701 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
MSH6P52701 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
MSH6P52701 VMO1-204ENST00000441199 741 ntTSL 2 BASIC29.14■■■□□ 2.26
MSH6P52701 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC29.14■■■□□ 2.26
MSH6P52701 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
MSH6P52701 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
MSH6P52701 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC29.14■■■□□ 2.26
MSH6P52701 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
MSH6P52701 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
MSH6P52701 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC29.14■■■□□ 2.25
MSH6P52701 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC29.14■■■□□ 2.25
MSH6P52701 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC29.13■■■□□ 2.25
MSH6P52701 PENK-204ENST00000518770 863 ntTSL 2 BASIC29.13■■■□□ 2.25
MSH6P52701 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 C2orf69P4-201ENST00000565394 541 ntBASIC29.13■■■□□ 2.25
MSH6P52701 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC29.13■■■□□ 2.25
MSH6P52701 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC29.13■■■□□ 2.25
MSH6P52701 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC29.13■■■□□ 2.25
MSH6P52701 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC29.13■■■□□ 2.25
MSH6P52701 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC29.13■■■□□ 2.25
MSH6P52701 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC29.13■■■□□ 2.25
MSH6P52701 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC29.13■■■□□ 2.25
MSH6P52701 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
MSH6P52701 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
MSH6P52701 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
MSH6P52701 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC29.12■■■□□ 2.25
MSH6P52701 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
MSH6P52701 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
MSH6P52701 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
MSH6P52701 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC29.12■■■□□ 2.25
MSH6P52701 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC29.12■■■□□ 2.25
MSH6P52701 PRKY-204ENST00000533551 1019 ntBASIC29.12■■■□□ 2.25
MSH6P52701 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC29.12■■■□□ 2.25
MSH6P52701 AL353708.3-201ENST00000610272 989 ntBASIC29.12■■■□□ 2.25
MSH6P52701 AC110285.5-201ENST00000611501 352 ntBASIC29.12■■■□□ 2.25
MSH6P52701 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
MSH6P52701 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC29.12■■■□□ 2.25
MSH6P52701 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
MSH6P52701 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC29.12■■■□□ 2.25
MSH6P52701 AC092068.2-201ENST00000590491 1708 ntBASIC29.11■■■□□ 2.25
MSH6P52701 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
MSH6P52701 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
MSH6P52701 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
MSH6P52701 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC29.11■■■□□ 2.25
MSH6P52701 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC29.11■■■□□ 2.25
MSH6P52701 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC29.11■■■□□ 2.25
MSH6P52701 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC29.11■■■□□ 2.25
MSH6P52701 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
MSH6P52701 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC29.11■■■□□ 2.25
MSH6P52701 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC29.11■■■□□ 2.25
MSH6P52701 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC29.1■■■□□ 2.25
MSH6P52701 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC29.1■■■□□ 2.25
MSH6P52701 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
MSH6P52701 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC29.1■■■□□ 2.25
MSH6P52701 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC29.1■■■□□ 2.25
MSH6P52701 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
MSH6P52701 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms