Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 KRT18P11-201ENST00000435214 1283 ntBASIC21.46■■□□□ 1.03
NEK3P51956 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.46■■□□□ 1.03
NEK3P51956 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.46■■□□□ 1.03
NEK3P51956 AC026471.6-201ENST00000622954 1905 ntBASIC21.46■■□□□ 1.03
NEK3P51956 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
NEK3P51956 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NEK3P51956 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.03
NEK3P51956 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NEK3P51956 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
NEK3P51956 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.45■■□□□ 1.02
NEK3P51956 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NEK3P51956 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NEK3P51956 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NEK3P51956 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.45■■□□□ 1.02
NEK3P51956 BID-214ENST00000617586 542 ntTSL 5 BASIC21.45■■□□□ 1.02
NEK3P51956 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NEK3P51956 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC21.45■■□□□ 1.02
NEK3P51956 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NEK3P51956 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NEK3P51956 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21.45■■□□□ 1.02
NEK3P51956 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NEK3P51956 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC21.44■■□□□ 1.02
NEK3P51956 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NEK3P51956 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
NEK3P51956 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NEK3P51956 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.44■■□□□ 1.02
NEK3P51956 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
NEK3P51956 AC080038.1-201ENST00000611274 1154 ntBASIC21.44■■□□□ 1.02
NEK3P51956 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NEK3P51956 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NEK3P51956 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
NEK3P51956 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.43■■□□□ 1.02
NEK3P51956 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.43■■□□□ 1.02
NEK3P51956 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK3P51956 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK3P51956 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK3P51956 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK3P51956 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.43■■□□□ 1.02
NEK3P51956 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.43■■□□□ 1.02
NEK3P51956 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
NEK3P51956 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.43■■□□□ 1.02
NEK3P51956 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
NEK3P51956 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
NEK3P51956 AL157384.1-201ENST00000445995 2473 ntBASIC21.43■■□□□ 1.02
NEK3P51956 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK3P51956 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.42■■□□□ 1.02
NEK3P51956 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.42■■□□□ 1.02
NEK3P51956 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK3P51956 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.42■■□□□ 1.02
NEK3P51956 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.42■■□□□ 1.02
NEK3P51956 AP001160.3-201ENST00000601484 763 ntBASIC21.42■■□□□ 1.02
NEK3P51956 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
NEK3P51956 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.42■■□□□ 1.02
NEK3P51956 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.42■■□□□ 1.02
NEK3P51956 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK3P51956 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
NEK3P51956 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK3P51956 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK3P51956 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.41■■□□□ 1.02
NEK3P51956 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.41■■□□□ 1.02
NEK3P51956 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
NEK3P51956 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.41■■□□□ 1.02
NEK3P51956 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.41■■□□□ 1.02
NEK3P51956 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.41■■□□□ 1.02
NEK3P51956 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK3P51956 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK3P51956 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
NEK3P51956 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.4■■□□□ 1.02
NEK3P51956 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.4■■□□□ 1.02
NEK3P51956 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.4■■□□□ 1.02
NEK3P51956 AC138907.5-202ENST00000569484 235 ntBASIC21.4■■□□□ 1.02
NEK3P51956 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
NEK3P51956 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.4■■□□□ 1.02
NEK3P51956 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NEK3P51956 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
NEK3P51956 PKD1P6-201ENST00000343738 4769 ntBASIC21.39■■□□□ 1.02
NEK3P51956 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NEK3P51956 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.39■■□□□ 1.01
NEK3P51956 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NEK3P51956 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NEK3P51956 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
NEK3P51956 AC073111.5-205ENST00000641717 521 ntBASIC21.39■■□□□ 1.01
NEK3P51956 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NEK3P51956 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
NEK3P51956 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.39■■□□□ 1.01
NEK3P51956 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21.39■■□□□ 1.01
NEK3P51956 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms