Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.1■□□□□ 0.65
MSX1P28360 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.1■□□□□ 0.65
MSX1P28360 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.1■□□□□ 0.65
MSX1P28360 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MSX1P28360 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.1■□□□□ 0.65
MSX1P28360 AC061975.6-201ENST00000579045 1553 ntBASIC19.1■□□□□ 0.65
MSX1P28360 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.09■□□□□ 0.65
MSX1P28360 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
MSX1P28360 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MSX1P28360 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
MSX1P28360 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX1P28360 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX1P28360 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX1P28360 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX1P28360 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MSX1P28360 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSX1P28360 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.09■□□□□ 0.65
MSX1P28360 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSX1P28360 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
MSX1P28360 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.09■□□□□ 0.65
MSX1P28360 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.09■□□□□ 0.65
MSX1P28360 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
MSX1P28360 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSX1P28360 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSX1P28360 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX1P28360 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX1P28360 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.08■□□□□ 0.64
MSX1P28360 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.08■□□□□ 0.64
MSX1P28360 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.08■□□□□ 0.64
MSX1P28360 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.08■□□□□ 0.64
MSX1P28360 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.08■□□□□ 0.64
MSX1P28360 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.08■□□□□ 0.64
MSX1P28360 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX1P28360 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX1P28360 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX1P28360 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.08■□□□□ 0.64
MSX1P28360 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
MSX1P28360 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.08■□□□□ 0.64
MSX1P28360 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSX1P28360 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC19.08■□□□□ 0.64
MSX1P28360 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.07■□□□□ 0.64
MSX1P28360 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
MSX1P28360 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX1P28360 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
MSX1P28360 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
MSX1P28360 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC19.07■□□□□ 0.64
MSX1P28360 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
MSX1P28360 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.07■□□□□ 0.64
MSX1P28360 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.07■□□□□ 0.64
MSX1P28360 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.07■□□□□ 0.64
MSX1P28360 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.07■□□□□ 0.64
MSX1P28360 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC19.07■□□□□ 0.64
MSX1P28360 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.07■□□□□ 0.64
MSX1P28360 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
MSX1P28360 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX1P28360 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX1P28360 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
MSX1P28360 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
MSX1P28360 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
MSX1P28360 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX1P28360 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.06■□□□□ 0.64
MSX1P28360 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX1P28360 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.06■□□□□ 0.64
MSX1P28360 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.06■□□□□ 0.64
MSX1P28360 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.06■□□□□ 0.64
MSX1P28360 SLC7A5P2-201ENST00000553010 536 ntBASIC19.06■□□□□ 0.64
MSX1P28360 MFSD11-216ENST00000590393 1141 ntBASIC19.06■□□□□ 0.64
MSX1P28360 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX1P28360 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSX1P28360 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
MSX1P28360 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX1P28360 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
MSX1P28360 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.06■□□□□ 0.64
MSX1P28360 DYM-203ENST00000442713 2147 ntTSL 2 BASIC19.06■□□□□ 0.64
MSX1P28360 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX1P28360 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX1P28360 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC19.05■□□□□ 0.64
MSX1P28360 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.05■□□□□ 0.64
MSX1P28360 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.05■□□□□ 0.64
MSX1P28360 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
MSX1P28360 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
MSX1P28360 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSX1P28360 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
MSX1P28360 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.05■□□□□ 0.64
MSX1P28360 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
MSX1P28360 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
MSX1P28360 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.04■□□□□ 0.64
MSX1P28360 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.04■□□□□ 0.64
MSX1P28360 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.04■□□□□ 0.64
MSX1P28360 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
MSX1P28360 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
MSX1P28360 UBE2DNL-204ENST00000602536 740 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms