Protein–RNA interactions for Protein: P28288

ABCD3, ATP-binding cassette sub-family D member 3, humanhuman

Predictions only

Length 659 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCD3P28288 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.24■□□□□ 0.67
ABCD3P28288 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 PALM-207ENST00000590161 2137 ntTSL 4 BASIC19.24■□□□□ 0.67
ABCD3P28288 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.24■□□□□ 0.67
ABCD3P28288 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.24■□□□□ 0.67
ABCD3P28288 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.24■□□□□ 0.67
ABCD3P28288 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.24■□□□□ 0.67
ABCD3P28288 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.24■□□□□ 0.67
ABCD3P28288 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.24■□□□□ 0.67
ABCD3P28288 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.24■□□□□ 0.67
ABCD3P28288 AC080038.1-201ENST00000611274 1154 ntBASIC19.24■□□□□ 0.67
ABCD3P28288 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.24■□□□□ 0.67
ABCD3P28288 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
ABCD3P28288 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.23■□□□□ 0.67
ABCD3P28288 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCD3P28288 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.23■□□□□ 0.67
ABCD3P28288 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.23■□□□□ 0.67
ABCD3P28288 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCD3P28288 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCD3P28288 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCD3P28288 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
ABCD3P28288 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
ABCD3P28288 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
ABCD3P28288 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
ABCD3P28288 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCD3P28288 AC026310.3-201ENST00000625186 2373 ntBASIC19.22■□□□□ 0.67
ABCD3P28288 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.22■□□□□ 0.67
ABCD3P28288 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCD3P28288 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCD3P28288 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCD3P28288 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
ABCD3P28288 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCD3P28288 METTL26-203ENST00000397664 604 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCD3P28288 AC245052.3-201ENST00000450182 901 ntBASIC19.22■□□□□ 0.67
ABCD3P28288 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.22■□□□□ 0.67
ABCD3P28288 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC19.22■□□□□ 0.67
ABCD3P28288 TERF1P5-201ENST00000477545 1207 ntBASIC19.22■□□□□ 0.67
ABCD3P28288 DUX4L16-201ENST00000555130 1264 ntBASIC19.22■□□□□ 0.67
ABCD3P28288 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
ABCD3P28288 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCD3P28288 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCD3P28288 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
ABCD3P28288 RBM17P2-201ENST00000616397 1405 ntBASIC19.22■□□□□ 0.67
ABCD3P28288 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
ABCD3P28288 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
ABCD3P28288 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.21■□□□□ 0.67
ABCD3P28288 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ABCD3P28288 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.21■□□□□ 0.67
ABCD3P28288 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
ABCD3P28288 AC243732.1-201ENST00000612648 864 ntBASIC19.21■□□□□ 0.67
ABCD3P28288 RARRES2P11-201ENST00000635158 484 ntBASIC19.21■□□□□ 0.67
ABCD3P28288 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
ABCD3P28288 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
ABCD3P28288 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC19.21■□□□□ 0.67
ABCD3P28288 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
ABCD3P28288 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCD3P28288 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCD3P28288 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCD3P28288 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCD3P28288 UQCRFS1P1-201ENST00000435169 820 ntBASIC19.2■□□□□ 0.66
ABCD3P28288 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCD3P28288 MDK-213ENST00000617138 635 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCD3P28288 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
ABCD3P28288 AC073111.5-205ENST00000641717 521 ntBASIC19.2■□□□□ 0.66
ABCD3P28288 FEM1AP4-201ENST00000443167 1987 ntBASIC19.2■□□□□ 0.66
ABCD3P28288 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC19.2■□□□□ 0.66
ABCD3P28288 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCD3P28288 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.2■□□□□ 0.66
ABCD3P28288 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
ABCD3P28288 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
ABCD3P28288 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCD3P28288 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCD3P28288 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 BMP1-204ENST00000397814 836 ntTSL 4 BASIC19.19■□□□□ 0.66
ABCD3P28288 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.19■□□□□ 0.66
ABCD3P28288 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.19■□□□□ 0.66
ABCD3P28288 AC013268.1-206ENST00000638368 961 ntBASIC19.19■□□□□ 0.66
ABCD3P28288 AC112229.1-201ENST00000639295 961 ntBASIC19.19■□□□□ 0.66
ABCD3P28288 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
ABCD3P28288 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.19■□□□□ 0.66
ABCD3P28288 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms