Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC22.04■■□□□ 1.12
BDNFP23560 TUB-203ENST00000534099 1759 ntTSL 2 BASIC22.04■■□□□ 1.12
BDNFP23560 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
BDNFP23560 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
BDNFP23560 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BDNFP23560 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
BDNFP23560 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BDNFP23560 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
BDNFP23560 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
BDNFP23560 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
BDNFP23560 AC091799.1-201ENST00000422823 811 ntBASIC22.03■■□□□ 1.12
BDNFP23560 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC22.03■■□□□ 1.12
BDNFP23560 EMC9-206ENST00000560403 872 ntTSL 2 BASIC22.03■■□□□ 1.12
BDNFP23560 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
BDNFP23560 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.03■■□□□ 1.12
BDNFP23560 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.03■■□□□ 1.12
BDNFP23560 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
BDNFP23560 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC22.02■■□□□ 1.12
BDNFP23560 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
BDNFP23560 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC22.02■■□□□ 1.12
BDNFP23560 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC22.02■■□□□ 1.12
BDNFP23560 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
BDNFP23560 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC22.02■■□□□ 1.12
BDNFP23560 DENND3-207ENST00000518347 850 ntTSL 2 BASIC22.02■■□□□ 1.12
BDNFP23560 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
BDNFP23560 CD44-222ENST00000526025 1052 ntTSL 2 BASIC22.02■■□□□ 1.12
BDNFP23560 AC069236.1-201ENST00000604339 616 ntBASIC22.02■■□□□ 1.12
BDNFP23560 AC016405.3-201ENST00000607710 860 ntBASIC22.02■■□□□ 1.12
BDNFP23560 AC008694.1-202ENST00000636953 945 ntBASIC22.02■■□□□ 1.12
BDNFP23560 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC22.02■■□□□ 1.12
BDNFP23560 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
BDNFP23560 AC244015.2-201ENST00000616358 1861 ntBASIC22.02■■□□□ 1.12
BDNFP23560 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.02■■□□□ 1.12
BDNFP23560 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC22.02■■□□□ 1.12
BDNFP23560 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.11
BDNFP23560 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
BDNFP23560 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
BDNFP23560 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
BDNFP23560 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
BDNFP23560 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC22.01■■□□□ 1.11
BDNFP23560 SLC29A4P1-201ENST00000398760 971 ntBASIC22.01■■□□□ 1.11
BDNFP23560 AC093787.1-201ENST00000450396 207 ntBASIC22.01■■□□□ 1.11
BDNFP23560 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
BDNFP23560 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.01■■□□□ 1.11
BDNFP23560 OR10C1-204ENST00000622521 1039 ntBASIC22.01■■□□□ 1.11
BDNFP23560 AC079834.2-201ENST00000609776 1949 ntBASIC22.01■■□□□ 1.11
BDNFP23560 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.01■■□□□ 1.11
BDNFP23560 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.01■■□□□ 1.11
BDNFP23560 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BDNFP23560 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BDNFP23560 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BDNFP23560 AL162412.1-201ENST00000567129 965 ntBASIC22■■□□□ 1.11
BDNFP23560 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
BDNFP23560 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC22■■□□□ 1.11
BDNFP23560 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC22■■□□□ 1.11
BDNFP23560 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
BDNFP23560 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BDNFP23560 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
BDNFP23560 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
BDNFP23560 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BDNFP23560 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BDNFP23560 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BDNFP23560 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
BDNFP23560 AL138781.1-201ENST00000566567 1274 ntBASIC21.99■■□□□ 1.11
BDNFP23560 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
BDNFP23560 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
BDNFP23560 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.99■■□□□ 1.11
BDNFP23560 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.98■■□□□ 1.11
BDNFP23560 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
BDNFP23560 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC21.98■■□□□ 1.11
BDNFP23560 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.98■■□□□ 1.11
BDNFP23560 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.98■■□□□ 1.11
BDNFP23560 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC21.98■■□□□ 1.11
BDNFP23560 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.98■■□□□ 1.11
BDNFP23560 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC21.98■■□□□ 1.11
BDNFP23560 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.98■■□□□ 1.11
BDNFP23560 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.98■■□□□ 1.11
BDNFP23560 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BDNFP23560 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
BDNFP23560 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
BDNFP23560 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BDNFP23560 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.98■■□□□ 1.11
BDNFP23560 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
BDNFP23560 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC21.98■■□□□ 1.11
BDNFP23560 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.97■■□□□ 1.11
BDNFP23560 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 MKRN4P-201ENST00000444706 1521 ntBASIC21.97■■□□□ 1.11
BDNFP23560 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.97■■□□□ 1.11
BDNFP23560 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
BDNFP23560 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms