Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC24.59■■□□□ 1.53
HMGB1P09429 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 AC245052.3-201ENST00000450182 901 ntBASIC24.59■■□□□ 1.53
HMGB1P09429 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC24.59■■□□□ 1.53
HMGB1P09429 SLC7A5P2-201ENST00000553010 536 ntBASIC24.59■■□□□ 1.53
HMGB1P09429 SLC7A5P1-201ENST00000568957 537 ntBASIC24.59■■□□□ 1.53
HMGB1P09429 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC24.59■■□□□ 1.53
HMGB1P09429 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGB1P09429 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC24.59■■□□□ 1.53
HMGB1P09429 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC24.59■■□□□ 1.53
HMGB1P09429 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 ERF-202ENST00000440177 2032 ntTSL 2 BASIC24.59■■□□□ 1.53
HMGB1P09429 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC24.59■■□□□ 1.53
HMGB1P09429 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
HMGB1P09429 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
HMGB1P09429 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
HMGB1P09429 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
HMGB1P09429 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC24.58■■□□□ 1.53
HMGB1P09429 RARRES2P11-201ENST00000635158 484 ntBASIC24.58■■□□□ 1.53
HMGB1P09429 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
HMGB1P09429 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC24.58■■□□□ 1.53
HMGB1P09429 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.58■■□□□ 1.53
HMGB1P09429 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
HMGB1P09429 PLK5-205ENST00000642079 1969 ntBASIC24.58■■□□□ 1.52
HMGB1P09429 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.58■■□□□ 1.52
HMGB1P09429 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
HMGB1P09429 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
HMGB1P09429 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
HMGB1P09429 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC24.57■■□□□ 1.52
HMGB1P09429 AC006128.1-201ENST00000624704 1661 ntBASIC24.57■■□□□ 1.52
HMGB1P09429 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.57■■□□□ 1.52
HMGB1P09429 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
HMGB1P09429 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
HMGB1P09429 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
HMGB1P09429 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC24.57■■□□□ 1.52
HMGB1P09429 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC24.57■■□□□ 1.52
HMGB1P09429 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC24.57■■□□□ 1.52
HMGB1P09429 KRT18P61-201ENST00000585825 1298 ntBASIC24.57■■□□□ 1.52
HMGB1P09429 AC019069.1-201ENST00000610008 1333 ntBASIC24.57■■□□□ 1.52
HMGB1P09429 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.57■■□□□ 1.52
HMGB1P09429 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGB1P09429 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
HMGB1P09429 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC24.56■■□□□ 1.52
HMGB1P09429 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HMGB1P09429 HACD1-201ENST00000326961 773 ntTSL 2 BASIC24.56■■□□□ 1.52
HMGB1P09429 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HMGB1P09429 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
HMGB1P09429 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HMGB1P09429 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC24.56■■□□□ 1.52
HMGB1P09429 NTF6G-201ENST00000591094 616 ntBASIC24.56■■□□□ 1.52
HMGB1P09429 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC24.56■■□□□ 1.52
HMGB1P09429 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
HMGB1P09429 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
HMGB1P09429 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
HMGB1P09429 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 AC011484.1-201ENST00000377652 1995 ntBASIC24.55■■□□□ 1.52
HMGB1P09429 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 AC087623.3-201ENST00000607047 1098 ntBASIC24.55■■□□□ 1.52
HMGB1P09429 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC24.55■■□□□ 1.52
HMGB1P09429 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
HMGB1P09429 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC24.54■■□□□ 1.52
HMGB1P09429 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC24.54■■□□□ 1.52
HMGB1P09429 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC24.54■■□□□ 1.52
HMGB1P09429 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC24.54■■□□□ 1.52
HMGB1P09429 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC24.54■■□□□ 1.52
HMGB1P09429 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC24.54■■□□□ 1.52
HMGB1P09429 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
HMGB1P09429 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGB1P09429 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HMGB1P09429 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HMGB1P09429 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGB1P09429 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC24.53■■□□□ 1.52
HMGB1P09429 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
HMGB1P09429 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC24.53■■□□□ 1.52
HMGB1P09429 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
HMGB1P09429 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC24.53■■□□□ 1.52
HMGB1P09429 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms