Protein–RNA interactions for Protein: P01130

LDLR, Low-density lipoprotein receptor, humanhuman

Predictions only

Length 860 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDLRP01130 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.03■□□□□ 0.8
LDLRP01130 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.03■□□□□ 0.8
LDLRP01130 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
LDLRP01130 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
LDLRP01130 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC20.03■□□□□ 0.8
LDLRP01130 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.02■□□□□ 0.8
LDLRP01130 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.02■□□□□ 0.8
LDLRP01130 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
LDLRP01130 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.02■□□□□ 0.8
LDLRP01130 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20.02■□□□□ 0.8
LDLRP01130 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.02■□□□□ 0.8
LDLRP01130 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.02■□□□□ 0.8
LDLRP01130 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
LDLRP01130 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
LDLRP01130 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.02■□□□□ 0.79
LDLRP01130 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.02■□□□□ 0.79
LDLRP01130 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.79
LDLRP01130 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.01■□□□□ 0.79
LDLRP01130 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.01■□□□□ 0.79
LDLRP01130 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.01■□□□□ 0.79
LDLRP01130 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
LDLRP01130 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
LDLRP01130 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.01■□□□□ 0.79
LDLRP01130 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.01■□□□□ 0.79
LDLRP01130 RAP2CP1-201ENST00000605103 478 ntBASIC20.01■□□□□ 0.79
LDLRP01130 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.01■□□□□ 0.79
LDLRP01130 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.01■□□□□ 0.79
LDLRP01130 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
LDLRP01130 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
LDLRP01130 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20■□□□□ 0.79
LDLRP01130 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20■□□□□ 0.79
LDLRP01130 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20■□□□□ 0.79
LDLRP01130 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 FEM1AP1-201ENST00000431297 1995 ntBASIC20■□□□□ 0.79
LDLRP01130 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
LDLRP01130 OXCT2P1-201ENST00000447263 1535 ntBASIC20■□□□□ 0.79
LDLRP01130 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20■□□□□ 0.79
LDLRP01130 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC19.99■□□□□ 0.79
LDLRP01130 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.99■□□□□ 0.79
LDLRP01130 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.99■□□□□ 0.79
LDLRP01130 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
LDLRP01130 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC19.98■□□□□ 0.79
LDLRP01130 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDLRP01130 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LDLRP01130 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC19.98■□□□□ 0.79
LDLRP01130 AC026471.6-201ENST00000622954 1905 ntBASIC19.98■□□□□ 0.79
LDLRP01130 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LDLRP01130 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
LDLRP01130 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LDLRP01130 AC006015.1-201ENST00000429970 570 ntBASIC19.98■□□□□ 0.79
LDLRP01130 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
LDLRP01130 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
LDLRP01130 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
LDLRP01130 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.98■□□□□ 0.79
LDLRP01130 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.98■□□□□ 0.79
LDLRP01130 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms