Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
PDGFBP01127 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PDGFBP01127 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PDGFBP01127 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
PDGFBP01127 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PDGFBP01127 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PDGFBP01127 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDGFBP01127 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDGFBP01127 AC239809.2-201ENST00000415381 517 ntBASIC21.2■□□□□ 0.98
PDGFBP01127 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDGFBP01127 AC133681.1-201ENST00000465482 601 ntBASIC21.2■□□□□ 0.98
PDGFBP01127 AL049597.2-201ENST00000565575 961 ntBASIC21.2■□□□□ 0.98
PDGFBP01127 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC21.2■□□□□ 0.98
PDGFBP01127 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC21.2■□□□□ 0.98
PDGFBP01127 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PDGFBP01127 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PDGFBP01127 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
PDGFBP01127 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
PDGFBP01127 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
PDGFBP01127 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC21.19■□□□□ 0.98
PDGFBP01127 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC21.19■□□□□ 0.98
PDGFBP01127 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC21.19■□□□□ 0.98
PDGFBP01127 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC21.19■□□□□ 0.98
PDGFBP01127 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PDGFBP01127 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDGFBP01127 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PDGFBP01127 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.18■□□□□ 0.98
PDGFBP01127 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.18■□□□□ 0.98
PDGFBP01127 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDGFBP01127 PRKY-204ENST00000533551 1019 ntBASIC21.18■□□□□ 0.98
PDGFBP01127 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PDGFBP01127 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.18■□□□□ 0.98
PDGFBP01127 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PDGFBP01127 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.18■□□□□ 0.98
PDGFBP01127 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
PDGFBP01127 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PDGFBP01127 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PDGFBP01127 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC21.17■□□□□ 0.98
PDGFBP01127 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.17■□□□□ 0.98
PDGFBP01127 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.17■□□□□ 0.98
PDGFBP01127 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC21.17■□□□□ 0.98
PDGFBP01127 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PDGFBP01127 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PDGFBP01127 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.17■□□□□ 0.98
PDGFBP01127 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.17■□□□□ 0.98
PDGFBP01127 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.17■□□□□ 0.98
PDGFBP01127 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 AL135905.2-201ENST00000584934 1404 ntBASIC21.17■□□□□ 0.98
PDGFBP01127 ANOS2P-203ENST00000472227 1816 ntBASIC21.17■□□□□ 0.98
PDGFBP01127 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PDGFBP01127 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.16■□□□□ 0.98
PDGFBP01127 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.16■□□□□ 0.98
PDGFBP01127 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
PDGFBP01127 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 NXN-202ENST00000537628 1340 ntTSL 3 BASIC21.16■□□□□ 0.98
PDGFBP01127 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
PDGFBP01127 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PDGFBP01127 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 KRASP1-201ENST00000407852 552 ntBASIC21.16■□□□□ 0.98
PDGFBP01127 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
PDGFBP01127 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.16■□□□□ 0.98
PDGFBP01127 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.16■□□□□ 0.98
PDGFBP01127 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC21.16■□□□□ 0.98
PDGFBP01127 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC21.16■□□□□ 0.98
PDGFBP01127 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
PDGFBP01127 AL590326.2-201ENST00000625139 305 ntBASIC21.16■□□□□ 0.98
PDGFBP01127 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PDGFBP01127 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PDGFBP01127 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PDGFBP01127 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PDGFBP01127 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PDGFBP01127 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
PDGFBP01127 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms