Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC19.93■□□□□ 0.78
SEMA3DO95025 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.93■□□□□ 0.78
SEMA3DO95025 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.93■□□□□ 0.78
SEMA3DO95025 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.93■□□□□ 0.78
SEMA3DO95025 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
SEMA3DO95025 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEMA3DO95025 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SEMA3DO95025 RNF165-205ENST00000588679 2904 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
SEMA3DO95025 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
SEMA3DO95025 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC19.92■□□□□ 0.78
SEMA3DO95025 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.92■□□□□ 0.78
SEMA3DO95025 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SEMA3DO95025 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.92■□□□□ 0.78
SEMA3DO95025 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4L2-201ENST00000561772 1275 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4L6-201ENST00000626483 1275 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4L1-201ENST00000627662 1275 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4L8-201ENST00000629013 1275 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4L3-201ENST00000630187 1275 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4L7-201ENST00000630678 1275 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 DUX4L5-201ENST00000630834 1275 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.92■□□□□ 0.78
SEMA3DO95025 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
SEMA3DO95025 KRT16P2-201ENST00000414673 1423 ntBASIC19.92■□□□□ 0.78
SEMA3DO95025 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.92■□□□□ 0.78
SEMA3DO95025 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
SEMA3DO95025 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SEMA3DO95025 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SEMA3DO95025 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.91■□□□□ 0.78
SEMA3DO95025 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SEMA3DO95025 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
SEMA3DO95025 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
SEMA3DO95025 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC19.91■□□□□ 0.78
SEMA3DO95025 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SEMA3DO95025 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.91■□□□□ 0.78
SEMA3DO95025 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC19.91■□□□□ 0.78
SEMA3DO95025 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
SEMA3DO95025 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.91■□□□□ 0.78
SEMA3DO95025 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
SEMA3DO95025 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC19.91■□□□□ 0.78
SEMA3DO95025 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.91■□□□□ 0.78
SEMA3DO95025 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
SEMA3DO95025 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC19.9■□□□□ 0.78
SEMA3DO95025 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 COX20-201ENST00000366528 568 ntTSL 2 BASIC19.9■□□□□ 0.78
SEMA3DO95025 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.9■□□□□ 0.78
SEMA3DO95025 AC104187.1-201ENST00000607510 612 ntBASIC19.9■□□□□ 0.78
SEMA3DO95025 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.9■□□□□ 0.78
SEMA3DO95025 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC19.9■□□□□ 0.78
SEMA3DO95025 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC19.9■□□□□ 0.78
SEMA3DO95025 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.9■□□□□ 0.78
SEMA3DO95025 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
SEMA3DO95025 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.89■□□□□ 0.77
SEMA3DO95025 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SEMA3DO95025 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
SEMA3DO95025 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.89■□□□□ 0.77
SEMA3DO95025 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.89■□□□□ 0.77
SEMA3DO95025 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.89■□□□□ 0.77
SEMA3DO95025 AC120498.10-201ENST00000621827 505 ntBASIC19.89■□□□□ 0.77
SEMA3DO95025 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.88■□□□□ 0.77
SEMA3DO95025 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
SEMA3DO95025 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC19.88■□□□□ 0.77
SEMA3DO95025 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC19.88■□□□□ 0.77
SEMA3DO95025 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.88■□□□□ 0.77
SEMA3DO95025 AP001160.3-201ENST00000601484 763 ntBASIC19.88■□□□□ 0.77
SEMA3DO95025 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.88■□□□□ 0.77
SEMA3DO95025 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
SEMA3DO95025 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms