Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.51■□□□□ 0.87
TRIM13O60858 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM13O60858 AL121603.2-201ENST00000557373 2117 ntBASIC20.51■□□□□ 0.87
TRIM13O60858 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
TRIM13O60858 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
TRIM13O60858 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.51■□□□□ 0.87
TRIM13O60858 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM13O60858 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM13O60858 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM13O60858 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.5■□□□□ 0.87
TRIM13O60858 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.5■□□□□ 0.87
TRIM13O60858 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
TRIM13O60858 AC007225.1-201ENST00000566331 1836 ntBASIC20.5■□□□□ 0.87
TRIM13O60858 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM13O60858 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
TRIM13O60858 AC027702.1-201ENST00000563810 1770 ntBASIC20.49■□□□□ 0.87
TRIM13O60858 AC055733.4-201ENST00000638462 1354 ntBASIC20.49■□□□□ 0.87
TRIM13O60858 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
TRIM13O60858 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM13O60858 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC20.49■□□□□ 0.87
TRIM13O60858 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.49■□□□□ 0.87
TRIM13O60858 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.49■□□□□ 0.87
TRIM13O60858 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
TRIM13O60858 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TRIM13O60858 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.48■□□□□ 0.87
TRIM13O60858 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
TRIM13O60858 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TRIM13O60858 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
TRIM13O60858 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 AC233992.3-201ENST00000607491 485 ntBASIC20.48■□□□□ 0.87
TRIM13O60858 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
TRIM13O60858 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TRIM13O60858 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM13O60858 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM13O60858 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TRIM13O60858 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC20.47■□□□□ 0.87
TRIM13O60858 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM13O60858 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TRIM13O60858 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.47■□□□□ 0.87
TRIM13O60858 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 MIR4767-201ENST00000582827 78 ntBASIC20.47■□□□□ 0.87
TRIM13O60858 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TRIM13O60858 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TRIM13O60858 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TRIM13O60858 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
TRIM13O60858 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM13O60858 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TRIM13O60858 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.46■□□□□ 0.87
TRIM13O60858 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM13O60858 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
TRIM13O60858 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.46■□□□□ 0.87
TRIM13O60858 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 AC020907.5-201ENST00000624372 1936 ntBASIC20.46■□□□□ 0.87
TRIM13O60858 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
TRIM13O60858 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TRIM13O60858 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
TRIM13O60858 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
TRIM13O60858 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TRIM13O60858 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
TRIM13O60858 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM13O60858 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM13O60858 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM13O60858 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM13O60858 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM13O60858 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM13O60858 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TRIM13O60858 IGHV3-19-201ENST00000521488 291 ntBASIC20.45■□□□□ 0.86
TRIM13O60858 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms