Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.79■□□□□ 0.6
SSX4O60224 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
SSX4O60224 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.79■□□□□ 0.6
SSX4O60224 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
SSX4O60224 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
SSX4O60224 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.79■□□□□ 0.6
SSX4O60224 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
SSX4O60224 DUX4L2-201ENST00000561772 1275 ntBASIC18.79■□□□□ 0.6
SSX4O60224 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.79■□□□□ 0.6
SSX4O60224 DUX4L6-201ENST00000626483 1275 ntBASIC18.79■□□□□ 0.6
SSX4O60224 DUX4L1-201ENST00000627662 1275 ntBASIC18.79■□□□□ 0.6
SSX4O60224 DUX4L8-201ENST00000629013 1275 ntBASIC18.79■□□□□ 0.6
SSX4O60224 DUX4L3-201ENST00000630187 1275 ntBASIC18.79■□□□□ 0.6
SSX4O60224 DUX4L7-201ENST00000630678 1275 ntBASIC18.79■□□□□ 0.6
SSX4O60224 DUX4L5-201ENST00000630834 1275 ntBASIC18.79■□□□□ 0.6
SSX4O60224 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX4O60224 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX4O60224 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
SSX4O60224 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC18.79■□□□□ 0.6
SSX4O60224 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.79■□□□□ 0.6
SSX4O60224 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC18.79■□□□□ 0.6
SSX4O60224 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSX4O60224 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX4O60224 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SSX4O60224 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX4O60224 AC123595.1-201ENST00000440769 1046 ntBASIC18.78■□□□□ 0.6
SSX4O60224 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
SSX4O60224 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
SSX4O60224 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.78■□□□□ 0.6
SSX4O60224 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.78■□□□□ 0.6
SSX4O60224 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC18.78■□□□□ 0.6
SSX4O60224 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
SSX4O60224 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
SSX4O60224 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX4O60224 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
SSX4O60224 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.77■□□□□ 0.6
SSX4O60224 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 AC090192.1-201ENST00000517740 490 ntBASIC18.77■□□□□ 0.6
SSX4O60224 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX4O60224 DUX4L4-201ENST00000566884 1269 ntBASIC18.77■□□□□ 0.6
SSX4O60224 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC18.77■□□□□ 0.6
SSX4O60224 EML3-217ENST00000531557 2509 ntTSL 5 BASIC18.77■□□□□ 0.6
SSX4O60224 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
SSX4O60224 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.77■□□□□ 0.6
SSX4O60224 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC18.77■□□□□ 0.59
SSX4O60224 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
SSX4O60224 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
SSX4O60224 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
SSX4O60224 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.76■□□□□ 0.59
SSX4O60224 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.76■□□□□ 0.59
SSX4O60224 RARRES2P11-201ENST00000635158 484 ntBASIC18.76■□□□□ 0.59
SSX4O60224 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
SSX4O60224 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.76■□□□□ 0.59
SSX4O60224 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.76■□□□□ 0.59
SSX4O60224 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
SSX4O60224 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC18.75■□□□□ 0.59
SSX4O60224 LINC01529-204ENST00000636474 1715 ntBASIC18.75■□□□□ 0.59
SSX4O60224 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.75■□□□□ 0.59
SSX4O60224 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.75■□□□□ 0.59
SSX4O60224 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.75■□□□□ 0.59
SSX4O60224 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 OR2I1P-207ENST00000453522 948 ntBASIC18.75■□□□□ 0.59
SSX4O60224 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SSX4O60224 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
SSX4O60224 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC18.75■□□□□ 0.59
SSX4O60224 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
SSX4O60224 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.75■□□□□ 0.59
SSX4O60224 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms