Protein–RNA interactions for Protein: O14646

CHD1, Chromodomain-helicase-DNA-binding protein 1, humanhuman

Predictions only

Length 1,710 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1O14646 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC34.37■■■■□ 3.09
CHD1O14646 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC34.36■■■■□ 3.09
CHD1O14646 CRAT-202ENST00000393384 973 ntTSL 2 BASIC34.36■■■■□ 3.09
CHD1O14646 AC113347.1-201ENST00000413321 391 ntBASIC34.36■■■■□ 3.09
CHD1O14646 CDV3P1-201ENST00000471403 739 ntBASIC34.36■■■■□ 3.09
CHD1O14646 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC34.36■■■■□ 3.09
CHD1O14646 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC34.36■■■■□ 3.09
CHD1O14646 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC34.36■■■■□ 3.09
CHD1O14646 AC145285.6-201ENST00000604632 637 ntBASIC34.35■■■■□ 3.09
CHD1O14646 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
CHD1O14646 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC34.35■■■■□ 3.09
CHD1O14646 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC34.35■■■■□ 3.09
CHD1O14646 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC34.35■■■■□ 3.09
CHD1O14646 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC34.35■■■■□ 3.09
CHD1O14646 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC34.35■■■■□ 3.09
CHD1O14646 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC34.35■■■■□ 3.09
CHD1O14646 VMO1-204ENST00000441199 741 ntTSL 2 BASIC34.35■■■■□ 3.09
CHD1O14646 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC34.35■■■■□ 3.09
CHD1O14646 AC026471.5-201ENST00000615068 467 ntBASIC34.35■■■■□ 3.09
CHD1O14646 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC34.34■■■■□ 3.09
CHD1O14646 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC34.34■■■■□ 3.09
CHD1O14646 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC34.34■■■■□ 3.09
CHD1O14646 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC34.34■■■■□ 3.09
CHD1O14646 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC34.34■■■■□ 3.09
CHD1O14646 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC34.34■■■■□ 3.09
CHD1O14646 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC34.34■■■■□ 3.09
CHD1O14646 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC34.33■■■■□ 3.09
CHD1O14646 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
CHD1O14646 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC34.33■■■■□ 3.09
CHD1O14646 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
CHD1O14646 HES2-205ENST00000487437 968 ntTSL 3 BASIC34.33■■■■□ 3.09
CHD1O14646 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC34.33■■■■□ 3.09
CHD1O14646 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC34.33■■■■□ 3.09
CHD1O14646 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
CHD1O14646 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC34.33■■■■□ 3.09
CHD1O14646 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC34.33■■■■□ 3.09
CHD1O14646 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC34.33■■■■□ 3.09
CHD1O14646 AP003071.4-201ENST00000562276 1284 ntBASIC34.33■■■■□ 3.09
CHD1O14646 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC34.33■■■■□ 3.09
CHD1O14646 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC34.32■■■■□ 3.09
CHD1O14646 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.09
CHD1O14646 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC34.32■■■■□ 3.09
CHD1O14646 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC34.32■■■■□ 3.08
CHD1O14646 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC34.32■■■■□ 3.08
CHD1O14646 AC004812.2-201ENST00000611079 2094 ntBASIC34.32■■■■□ 3.08
CHD1O14646 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
CHD1O14646 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC34.32■■■■□ 3.08
CHD1O14646 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC34.32■■■■□ 3.08
CHD1O14646 AC005521.1-201ENST00000393351 872 ntBASIC34.32■■■■□ 3.08
CHD1O14646 AL590326.2-201ENST00000625139 305 ntBASIC34.32■■■■□ 3.08
CHD1O14646 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC34.32■■■■□ 3.08
CHD1O14646 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC34.32■■■■□ 3.08
CHD1O14646 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC34.31■■■■□ 3.08
CHD1O14646 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
CHD1O14646 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC34.31■■■■□ 3.08
CHD1O14646 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
CHD1O14646 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
CHD1O14646 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC34.31■■■■□ 3.08
CHD1O14646 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC34.31■■■■□ 3.08
CHD1O14646 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC34.31■■■■□ 3.08
CHD1O14646 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC34.31■■■■□ 3.08
CHD1O14646 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC34.31■■■■□ 3.08
CHD1O14646 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC34.3■■■■□ 3.08
CHD1O14646 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC34.3■■■■□ 3.08
CHD1O14646 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
CHD1O14646 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC34.3■■■■□ 3.08
CHD1O14646 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
CHD1O14646 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC34.3■■■■□ 3.08
CHD1O14646 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC34.3■■■■□ 3.08
CHD1O14646 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC34.3■■■■□ 3.08
CHD1O14646 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC34.3■■■■□ 3.08
CHD1O14646 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC34.3■■■■□ 3.08
CHD1O14646 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC34.29■■■■□ 3.08
CHD1O14646 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC34.29■■■■□ 3.08
CHD1O14646 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC34.29■■■■□ 3.08
CHD1O14646 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC34.29■■■■□ 3.08
CHD1O14646 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CHD1O14646 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC34.28■■■■□ 3.08
CHD1O14646 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC34.28■■■■□ 3.08
CHD1O14646 KRT18P68-201ENST00000392293 1000 ntBASIC34.28■■■■□ 3.08
CHD1O14646 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC34.28■■■■□ 3.08
CHD1O14646 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CHD1O14646 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CHD1O14646 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CHD1O14646 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC34.28■■■■□ 3.08
CHD1O14646 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC34.28■■■■□ 3.08
CHD1O14646 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC34.27■■■■□ 3.08
CHD1O14646 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CHD1O14646 USF2-205ENST00000594064 1179 ntTSL 2 BASIC34.27■■■■□ 3.08
CHD1O14646 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC34.27■■■■□ 3.08
CHD1O14646 CABP2-204ENST00000636477 941 ntTSL 5 BASIC34.27■■■■□ 3.08
CHD1O14646 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC34.27■■■■□ 3.08
CHD1O14646 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC34.27■■■■□ 3.08
CHD1O14646 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC34.27■■■■□ 3.08
CHD1O14646 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC34.27■■■■□ 3.08
CHD1O14646 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC34.27■■■■□ 3.08
CHD1O14646 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC34.26■■■■□ 3.08
CHD1O14646 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC34.26■■■■□ 3.08
CHD1O14646 THRA-202ENST00000394121 2260 ntTSL 2 BASIC34.26■■■■□ 3.08
CHD1O14646 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC34.26■■■■□ 3.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms