Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AC098934.4-201ENST00000564127 592 ntBASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AC007322.3-201ENST00000426526 701 ntBASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 AC012676.1-201ENST00000574705 1949 ntBASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
C1QTNF3-AMACRE9PGA6 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AL117328.2-201ENST00000624617 1940 ntBASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AC100791.3-201ENST00000617619 330 ntBASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 SERPINH1P1-201ENST00000419794 1249 ntBASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
C1QTNF3-AMACRE9PGA6 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms