Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM49D1C9J1S8 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 MIR4767-201ENST00000582827 78 ntBASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM49D1C9J1S8 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 PCDHAC2-203ENST00000615316 3011 ntBASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 AC009237.3-201ENST00000393279 1427 ntBASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 AC007225.1-201ENST00000566331 1836 ntBASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 AC055733.4-201ENST00000638462 1354 ntBASIC20.85■□□□□ 0.93
TRIM49D1C9J1S8 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM49D1C9J1S8 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM49D1C9J1S8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM49D1C9J1S8 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM49D1C9J1S8 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM49D1C9J1S8 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRIM49D1C9J1S8 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM49D1C9J1S8 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 AC233992.3-201ENST00000607491 485 ntBASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC20.83■□□□□ 0.93
TRIM49D1C9J1S8 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TRIM49D1C9J1S8 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 AC126544.1-201ENST00000580842 1059 ntBASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 AC020907.5-201ENST00000624372 1936 ntBASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
TRIM49D1C9J1S8 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms