Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 AP003071.4-201ENST00000562276 1284 ntBASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 MCRIP2P1-201ENST00000394346 511 ntBASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A6A6NMZ7 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 LINC01124-201ENST00000409786 2117 ntBASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 DUT-205ENST00000558813 769 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 MIR6786-201ENST00000616843 113 ntBASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 AL023875.1-201ENST00000640777 796 ntBASIC18.97■□□□□ 0.63
COL6A6A6NMZ7 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 LTBR-211ENST00000543190 785 ntTSL 3 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
COL6A6A6NMZ7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.62
COL6A6A6NMZ7 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 PBXIP1-201ENST00000368460 1175 ntAPPRIS ALT2 TSL 3 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 AC079089.2-201ENST00000531211 1277 ntBASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
COL6A6A6NMZ7 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 KRT18P57-201ENST00000443599 1254 ntBASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL6A6A6NMZ7 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC18.93■□□□□ 0.62
COL6A6A6NMZ7 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms