Protein–RNA interactions for Protein: A0A0B4J249

TRAV5, T-cell receptor alpha variable 5 (Fragment), humanhuman

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV5A0A0B4J249 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
TRAV5A0A0B4J249 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 AL512631.2-201ENST00000604634 923 ntBASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 AC007952.6-201ENST00000573168 2673 ntBASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 AC003957.1-201ENST00000625108 2673 ntBASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 STX5-203ENST00000394690 1568 ntTSL 5 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 SYT6-210ENST00000641643 1587 ntBASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.17■□□□□ 0.18
TRAV5A0A0B4J249 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
TRAV5A0A0B4J249 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 ADM-207ENST00000530439 1839 ntTSL 2 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC16.15■□□□□ 0.18
TRAV5A0A0B4J249 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
TRAV5A0A0B4J249 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 AC007225.1-201ENST00000566331 1836 ntBASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
TRAV5A0A0B4J249 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms