Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
USH1CQ9Y6N9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.77■□□□□ 0.91
USH1CQ9Y6N9 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.91
USH1CQ9Y6N9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
USH1CQ9Y6N9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 KRT125P-201ENST00000546827 989 ntBASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 AC010997.5-201ENST00000609182 354 ntBASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
USH1CQ9Y6N9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 Z92544.1-202ENST00000571933 1220 ntBASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 AC241377.3-202ENST00000626088 1088 ntBASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 AC241585.3-202ENST00000628937 1088 ntBASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 AC245100.8-202ENST00000629247 1058 ntBASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
USH1CQ9Y6N9 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
USH1CQ9Y6N9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 AL117332.1-201ENST00000622628 974 ntBASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 AC068587.7-201ENST00000641602 218 ntBASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
USH1CQ9Y6N9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 MIR4787-201ENST00000607364 84 ntBASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 pRNA.6-201ENST00000610482 90 ntBASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 pRNA.5-201ENST00000612139 90 ntBASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 pRNA.11-201ENST00000618423 90 ntBASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 pRNA.13-201ENST00000619112 90 ntBASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 AC138932.1-201ENST00000534164 6830 ntBASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 PLK5-205ENST00000642079 1969 ntBASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
USH1CQ9Y6N9 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms