Protein–RNA interactions for Protein: Q9Y5F3

PCDHB1, Protocadherin beta-1, humanhuman

Predictions only

Length 818 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB1Q9Y5F3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB1Q9Y5F3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB1Q9Y5F3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDHB1Q9Y5F3 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 MFSD11-216ENST00000590393 1141 ntBASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
PCDHB1Q9Y5F3 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDHB1Q9Y5F3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
PCDHB1Q9Y5F3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDHB1Q9Y5F3 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.94
PCDHB1Q9Y5F3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.89■□□□□ 0.94
PCDHB1Q9Y5F3 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PCDHB1Q9Y5F3 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 AL050303.2-201ENST00000619798 666 ntBASIC20.89■□□□□ 0.93
PCDHB1Q9Y5F3 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 TSPY20P-201ENST00000450910 630 ntBASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDHB1Q9Y5F3 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 AC053503.5-201ENST00000601508 636 ntBASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PCDHB1Q9Y5F3 FEM1AP4-201ENST00000443167 1987 ntBASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 EEF1DP3-203ENST00000566025 782 ntBASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 AC142086.2-201ENST00000569753 217 ntBASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDHB1Q9Y5F3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms