Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.98■□□□□ 0.63
SHANK1Q9Y566 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 AC060766.5-201ENST00000590539 871 ntBASIC18.98■□□□□ 0.63
SHANK1Q9Y566 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 AC243732.1-201ENST00000612648 864 ntBASIC18.98■□□□□ 0.63
SHANK1Q9Y566 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC18.98■□□□□ 0.63
SHANK1Q9Y566 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
SHANK1Q9Y566 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 AL591742.1-201ENST00000604433 565 ntBASIC18.96■□□□□ 0.63
SHANK1Q9Y566 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC18.96■□□□□ 0.63
SHANK1Q9Y566 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 AC233723.2-201ENST00000623798 2106 ntBASIC18.95■□□□□ 0.62
SHANK1Q9Y566 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 AL117328.2-201ENST00000624617 1940 ntBASIC18.95■□□□□ 0.62
SHANK1Q9Y566 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
SHANK1Q9Y566 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK1Q9Y566 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.94■□□□□ 0.62
SHANK1Q9Y566 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK1Q9Y566 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.94■□□□□ 0.62
SHANK1Q9Y566 FAM197Y4-202ENST00000622692 608 ntBASIC18.94■□□□□ 0.62
SHANK1Q9Y566 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC18.94■□□□□ 0.62
SHANK1Q9Y566 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK1Q9Y566 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
SHANK1Q9Y566 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 C1QBPP2-201ENST00000528754 825 ntBASIC18.93■□□□□ 0.62
SHANK1Q9Y566 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC18.93■□□□□ 0.62
SHANK1Q9Y566 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms