Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.85■□□□□ 0.61
HIF3AQ9Y2N7 AC053503.5-201ENST00000601508 636 ntBASIC18.85■□□□□ 0.61
HIF3AQ9Y2N7 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
HIF3AQ9Y2N7 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
HIF3AQ9Y2N7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.85■□□□□ 0.61
HIF3AQ9Y2N7 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.85■□□□□ 0.61
HIF3AQ9Y2N7 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 RHOF-204ENST00000537265 699 ntTSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
HIF3AQ9Y2N7 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.61
HIF3AQ9Y2N7 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 NT5C3AP1-201ENST00000394500 1012 ntBASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 MTURN-203ENST00000409688 843 ntTSL 2 BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
HIF3AQ9Y2N7 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 JARID2-AS1-201ENST00000441978 455 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC18.82■□□□□ 0.6
HIF3AQ9Y2N7 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 AC005837.3-201ENST00000612163 286 ntBASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.81■□□□□ 0.6
HIF3AQ9Y2N7 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 HYI-206ENST00000372434 1025 ntTSL 5 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
HIF3AQ9Y2N7 NME4-202ENST00000382940 766 ntTSL 3 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.2 ms