Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 FGF8-207ENST00000618991 856 ntTSL 3 BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC39.98■■■■□ 3.99
SHROOM4Q9ULL8 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC39.97■■■■□ 3.99
SHROOM4Q9ULL8 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC39.97■■■■□ 3.99
SHROOM4Q9ULL8 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC39.97■■■■□ 3.99
SHROOM4Q9ULL8 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC39.97■■■■□ 3.99
SHROOM4Q9ULL8 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 AC003102.1-202ENST00000563394 1796 ntBASIC39.96■■■■□ 3.99
SHROOM4Q9ULL8 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 MDFI-202ENST00000373050 809 ntTSL 2 BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 AC211429.1-201ENST00000415277 523 ntBASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 TERT-206ENST00000508104 2486 ntTSL 5 BASIC39.95■■■■□ 3.99
SHROOM4Q9ULL8 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 SNORA78-201ENST00000459373 127 ntBASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 RNF146-206ENST00000480444 843 ntTSL 2 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 AC243732.1-201ENST00000612648 864 ntBASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 RPPH1-201ENST00000516869 333 ntBASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC39.94■■■■□ 3.98
SHROOM4Q9ULL8 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC39.93■■■■□ 3.98
SHROOM4Q9ULL8 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC39.93■■■■□ 3.98
SHROOM4Q9ULL8 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC39.93■■■■□ 3.98
SHROOM4Q9ULL8 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC39.93■■■■□ 3.98
SHROOM4Q9ULL8 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC39.93■■■■□ 3.98
SHROOM4Q9ULL8 AC012618.2-201ENST00000428058 849 ntBASIC39.93■■■■□ 3.98
SHROOM4Q9ULL8 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC39.92■■■■□ 3.98
SHROOM4Q9ULL8 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC39.92■■■■□ 3.98
SHROOM4Q9ULL8 AC061975.6-201ENST00000579045 1553 ntBASIC39.92■■■■□ 3.98
SHROOM4Q9ULL8 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC39.92■■■■□ 3.98
SHROOM4Q9ULL8 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC39.92■■■■□ 3.98
SHROOM4Q9ULL8 HLA-B-256ENST00000639848 1089 ntBASIC39.92■■■■□ 3.98
SHROOM4Q9ULL8 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC39.92■■■■□ 3.98
SHROOM4Q9ULL8 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC39.91■■■■□ 3.98
SHROOM4Q9ULL8 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC39.91■■■■□ 3.98
SHROOM4Q9ULL8 RBM17P2-201ENST00000616397 1405 ntBASIC39.91■■■■□ 3.98
SHROOM4Q9ULL8 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC39.91■■■■□ 3.98
SHROOM4Q9ULL8 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 BX088651.1-201ENST00000540551 451 ntBASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC39.9■■■■□ 3.98
SHROOM4Q9ULL8 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 CYP2T3P-201ENST00000601990 817 ntBASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
SHROOM4Q9ULL8 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC39.88■■■■□ 3.98
SHROOM4Q9ULL8 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC39.88■■■■□ 3.98
SHROOM4Q9ULL8 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC39.88■■■■□ 3.98
SHROOM4Q9ULL8 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC39.88■■■■□ 3.97
SHROOM4Q9ULL8 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC39.88■■■■□ 3.97
SHROOM4Q9ULL8 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC39.88■■■■□ 3.97
SHROOM4Q9ULL8 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 OR2A1-AS1-201ENST00000462305 773 ntBASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC39.87■■■■□ 3.97
SHROOM4Q9ULL8 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC39.87■■■■□ 3.97
Retrieved 100 of 98,524 protein–RNA pairs in 65.3 ms