Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC026185.1-201ENST00000445748 174 ntBASIC21.16■□□□□ 0.98
LHX3Q9UBR4 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.16■□□□□ 0.98
LHX3Q9UBR4 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC21.16■□□□□ 0.98
LHX3Q9UBR4 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.16■□□□□ 0.98
LHX3Q9UBR4 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.16■□□□□ 0.98
LHX3Q9UBR4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.16■□□□□ 0.98
LHX3Q9UBR4 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LHX3Q9UBR4 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 AC245052.3-201ENST00000450182 901 ntBASIC21.15■□□□□ 0.98
LHX3Q9UBR4 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 AC231657.2-201ENST00000624556 255 ntBASIC21.15■□□□□ 0.98
LHX3Q9UBR4 AC013268.1-206ENST00000638368 961 ntBASIC21.15■□□□□ 0.98
LHX3Q9UBR4 AC112229.1-201ENST00000639295 961 ntBASIC21.15■□□□□ 0.98
LHX3Q9UBR4 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
LHX3Q9UBR4 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC21.14■□□□□ 0.98
LHX3Q9UBR4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC21.14■□□□□ 0.98
LHX3Q9UBR4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LHX3Q9UBR4 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
LHX3Q9UBR4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 AC007322.1-201ENST00000426983 750 ntBASIC21.13■□□□□ 0.97
LHX3Q9UBR4 CROCCP5-201ENST00000436658 830 ntBASIC21.13■□□□□ 0.97
LHX3Q9UBR4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 AC007322.4-201ENST00000509611 723 ntBASIC21.13■□□□□ 0.97
LHX3Q9UBR4 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LHX3Q9UBR4 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 PARP1-210ENST00000629232 477 ntTSL 5 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
LHX3Q9UBR4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 AC091799.1-201ENST00000422823 811 ntBASIC21.11■□□□□ 0.97
LHX3Q9UBR4 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 AL050303.2-201ENST00000619798 666 ntBASIC21.11■□□□□ 0.97
LHX3Q9UBR4 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LHX3Q9UBR4 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LHX3Q9UBR4 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.1■□□□□ 0.97
LHX3Q9UBR4 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
LHX3Q9UBR4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
LHX3Q9UBR4 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.1■□□□□ 0.97
LHX3Q9UBR4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LHX3Q9UBR4 MIR663A-201ENST00000385250 93 ntBASIC21.1■□□□□ 0.97
LHX3Q9UBR4 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms