Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USE1Q9NZ43 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC19.4■□□□□ 0.7
USE1Q9NZ43 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
USE1Q9NZ43 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.39■□□□□ 0.7
USE1Q9NZ43 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
USE1Q9NZ43 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USE1Q9NZ43 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
USE1Q9NZ43 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
USE1Q9NZ43 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
USE1Q9NZ43 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC19.39■□□□□ 0.69
USE1Q9NZ43 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC19.39■□□□□ 0.69
USE1Q9NZ43 YBX1P4-201ENST00000392794 808 ntBASIC19.39■□□□□ 0.69
USE1Q9NZ43 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.39■□□□□ 0.69
USE1Q9NZ43 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
USE1Q9NZ43 AC020907.5-201ENST00000624372 1936 ntBASIC19.39■□□□□ 0.69
USE1Q9NZ43 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USE1Q9NZ43 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.39■□□□□ 0.69
USE1Q9NZ43 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
USE1Q9NZ43 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC19.38■□□□□ 0.69
USE1Q9NZ43 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.38■□□□□ 0.69
USE1Q9NZ43 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.38■□□□□ 0.69
USE1Q9NZ43 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 AL391422.3-201ENST00000603791 2761 ntBASIC19.38■□□□□ 0.69
USE1Q9NZ43 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.38■□□□□ 0.69
USE1Q9NZ43 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.38■□□□□ 0.69
USE1Q9NZ43 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
USE1Q9NZ43 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USE1Q9NZ43 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
USE1Q9NZ43 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
USE1Q9NZ43 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
USE1Q9NZ43 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC19.37■□□□□ 0.69
USE1Q9NZ43 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC19.37■□□□□ 0.69
USE1Q9NZ43 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USE1Q9NZ43 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
USE1Q9NZ43 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.36■□□□□ 0.69
USE1Q9NZ43 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC19.36■□□□□ 0.69
USE1Q9NZ43 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
USE1Q9NZ43 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
USE1Q9NZ43 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC19.36■□□□□ 0.69
USE1Q9NZ43 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USE1Q9NZ43 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
USE1Q9NZ43 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USE1Q9NZ43 KRT8P33-201ENST00000508125 1423 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
USE1Q9NZ43 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 BX664725.1-201ENST00000438252 379 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC19.35■□□□□ 0.69
USE1Q9NZ43 AL031848.2-201ENST00000607670 837 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 AC092028.1-203ENST00000608262 953 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 AC087239.1-201ENST00000622671 572 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 AC241377.3-202ENST00000626088 1088 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 AC241585.3-202ENST00000628937 1088 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 AC245100.8-202ENST00000629247 1058 ntBASIC19.35■□□□□ 0.69
USE1Q9NZ43 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms