Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 AC139530.1-201ENST00000575312 1977 ntBASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.92■□□□□ 0.94
TM9SF3Q9HD45 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TM9SF3Q9HD45 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 KRT16P2-201ENST00000414673 1423 ntBASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 RBM17P2-201ENST00000616397 1405 ntBASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 AC008687.6-201ENST00000596318 630 ntBASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 ITM2C-210ENST00000620962 501 ntBASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TM9SF3Q9HD45 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.89■□□□□ 0.94
TM9SF3Q9HD45 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TM9SF3Q9HD45 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TM9SF3Q9HD45 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TM9SF3Q9HD45 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 KRT18P29-201ENST00000397031 1267 ntBASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TM9SF3Q9HD45 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 AL591742.1-201ENST00000604433 565 ntBASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TM9SF3Q9HD45 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 AL024507.2-201ENST00000606070 2574 ntBASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 AL162412.1-201ENST00000567129 965 ntBASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 AC083880.1-201ENST00000608266 535 ntBASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
TM9SF3Q9HD45 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.86■□□□□ 0.93
TM9SF3Q9HD45 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 AC061975.6-201ENST00000579045 1553 ntBASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TM9SF3Q9HD45 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms