Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.62■■□□□ 1.05
TTC28Q96AY4 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC21.62■■□□□ 1.05
TTC28Q96AY4 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
TTC28Q96AY4 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
TTC28Q96AY4 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TTC28Q96AY4 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TTC28Q96AY4 ZNF598-202ENST00000562103 2717 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TTC28Q96AY4 GUK1-204ENST00000366721 689 ntTSL 3 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
TTC28Q96AY4 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
TTC28Q96AY4 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.61■■□□□ 1.05
TTC28Q96AY4 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.61■■□□□ 1.05
TTC28Q96AY4 AC145676.1-201ENST00000514988 2004 ntBASIC21.61■■□□□ 1.05
TTC28Q96AY4 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 SHF-206ENST00000560471 2499 ntTSL 5 BASIC21.6■■□□□ 1.05
TTC28Q96AY4 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 BX664615.1-201ENST00000443558 458 ntBASIC21.6■■□□□ 1.05
TTC28Q96AY4 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
TTC28Q96AY4 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
TTC28Q96AY4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.59■■□□□ 1.05
TTC28Q96AY4 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.59■■□□□ 1.05
TTC28Q96AY4 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
TTC28Q96AY4 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.59■■□□□ 1.05
TTC28Q96AY4 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TTC28Q96AY4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.59■■□□□ 1.05
TTC28Q96AY4 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TTC28Q96AY4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.59■■□□□ 1.05
TTC28Q96AY4 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TTC28Q96AY4 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
TTC28Q96AY4 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
TTC28Q96AY4 AC079630.1-202ENST00000618127 1840 ntBASIC21.59■■□□□ 1.05
TTC28Q96AY4 RBM17P1-201ENST00000453646 1190 ntBASIC21.58■■□□□ 1.05
TTC28Q96AY4 LY6E-214ENST00000522971 857 ntAPPRIS P2 TSL 2 BASIC21.58■■□□□ 1.05
TTC28Q96AY4 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
TTC28Q96AY4 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
TTC28Q96AY4 AL355355.2-201ENST00000442321 338 ntBASIC21.58■■□□□ 1.05
TTC28Q96AY4 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC21.58■■□□□ 1.05
TTC28Q96AY4 CRK-204ENST00000574295 1391 ntTSL 5 BASIC21.58■■□□□ 1.04
TTC28Q96AY4 AC110285.5-201ENST00000611501 352 ntBASIC21.57■■□□□ 1.04
TTC28Q96AY4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TTC28Q96AY4 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
TTC28Q96AY4 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC21.57■■□□□ 1.04
TTC28Q96AY4 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TTC28Q96AY4 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TTC28Q96AY4 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.57■■□□□ 1.04
TTC28Q96AY4 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TTC28Q96AY4 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
TTC28Q96AY4 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.57■■□□□ 1.04
TTC28Q96AY4 AC104076.2-201ENST00000448912 469 ntBASIC21.57■■□□□ 1.04
TTC28Q96AY4 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC21.57■■□□□ 1.04
TTC28Q96AY4 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC21.57■■□□□ 1.04
TTC28Q96AY4 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
TTC28Q96AY4 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.57■■□□□ 1.04
TTC28Q96AY4 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
TTC28Q96AY4 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.56■■□□□ 1.04
TTC28Q96AY4 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TTC28Q96AY4 AL137013.1-201ENST00000432946 1228 ntBASIC21.56■■□□□ 1.04
TTC28Q96AY4 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.56■■□□□ 1.04
TTC28Q96AY4 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.56■■□□□ 1.04
TTC28Q96AY4 AC120498.8-201ENST00000614275 531 ntBASIC21.56■■□□□ 1.04
TTC28Q96AY4 AL353803.4-201ENST00000565882 1934 ntBASIC21.56■■□□□ 1.04
TTC28Q96AY4 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
TTC28Q96AY4 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.56■■□□□ 1.04
TTC28Q96AY4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.56■■□□□ 1.04
TTC28Q96AY4 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC21.56■■□□□ 1.04
TTC28Q96AY4 AC010947.1-201ENST00000623454 693 ntBASIC21.56■■□□□ 1.04
TTC28Q96AY4 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
TTC28Q96AY4 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
TTC28Q96AY4 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC21.55■■□□□ 1.04
TTC28Q96AY4 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.55■■□□□ 1.04
TTC28Q96AY4 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC21.55■■□□□ 1.04
TTC28Q96AY4 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC21.55■■□□□ 1.04
TTC28Q96AY4 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TTC28Q96AY4 CYP2D8P-201ENST00000433633 1490 ntBASIC21.55■■□□□ 1.04
TTC28Q96AY4 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
TTC28Q96AY4 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.55■■□□□ 1.04
TTC28Q96AY4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC21.55■■□□□ 1.04
TTC28Q96AY4 AC087633.2-202ENST00000565166 1439 ntBASIC21.55■■□□□ 1.04
TTC28Q96AY4 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms