Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 KRT16P2-201ENST00000414673 1423 ntBASIC19.39■□□□□ 0.69
BEST3Q8N1M1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
BEST3Q8N1M1 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 AC068338.2-201ENST00000563278 1430 ntBASIC19.38■□□□□ 0.69
BEST3Q8N1M1 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
BEST3Q8N1M1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 FAM99A-202ENST00000538190 1989 ntBASIC19.37■□□□□ 0.69
BEST3Q8N1M1 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 AC007322.4-201ENST00000509611 723 ntBASIC19.37■□□□□ 0.69
BEST3Q8N1M1 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 AC142086.2-201ENST00000569753 217 ntBASIC19.37■□□□□ 0.69
BEST3Q8N1M1 AC133552.2-202ENST00000575694 574 ntBASIC19.37■□□□□ 0.69
BEST3Q8N1M1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 AC010542.4-201ENST00000563151 1910 ntBASIC19.37■□□□□ 0.69
BEST3Q8N1M1 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
BEST3Q8N1M1 AL024507.2-201ENST00000606070 2574 ntBASIC19.37■□□□□ 0.69
BEST3Q8N1M1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 AL138781.1-201ENST00000566567 1274 ntBASIC19.36■□□□□ 0.69
BEST3Q8N1M1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
BEST3Q8N1M1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
BEST3Q8N1M1 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
BEST3Q8N1M1 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms