Protein–RNA interactions for Protein: Q8IV63

VRK3, Inactive serine/threonine-protein kinase VRK3, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3Q8IV63 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VRK3Q8IV63 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.47■□□□□ 0.87
VRK3Q8IV63 AL049796.1-201ENST00000565336 1766 ntBASIC20.47■□□□□ 0.87
VRK3Q8IV63 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VRK3Q8IV63 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VRK3Q8IV63 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VRK3Q8IV63 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.47■□□□□ 0.87
VRK3Q8IV63 KRT18P20-201ENST00000548986 1279 ntBASIC20.47■□□□□ 0.87
VRK3Q8IV63 AC137761.2-201ENST00000561729 223 ntBASIC20.47■□□□□ 0.87
VRK3Q8IV63 AC145350.3-201ENST00000569033 163 ntBASIC20.47■□□□□ 0.87
VRK3Q8IV63 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.47■□□□□ 0.87
VRK3Q8IV63 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VRK3Q8IV63 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
VRK3Q8IV63 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 KRT16P2-201ENST00000414673 1423 ntBASIC20.46■□□□□ 0.87
VRK3Q8IV63 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VRK3Q8IV63 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.46■□□□□ 0.87
VRK3Q8IV63 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VRK3Q8IV63 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VRK3Q8IV63 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
VRK3Q8IV63 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 IKBKGP1-201ENST00000612193 1073 ntBASIC20.45■□□□□ 0.86
VRK3Q8IV63 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VRK3Q8IV63 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VRK3Q8IV63 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
VRK3Q8IV63 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VRK3Q8IV63 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VRK3Q8IV63 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VRK3Q8IV63 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VRK3Q8IV63 PARP1-202ENST00000366792 553 ntTSL 3 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VRK3Q8IV63 AC120498.10-201ENST00000621827 505 ntBASIC20.44■□□□□ 0.86
VRK3Q8IV63 AC092437.1-201ENST00000624794 1048 ntBASIC20.44■□□□□ 0.86
VRK3Q8IV63 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VRK3Q8IV63 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
VRK3Q8IV63 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
VRK3Q8IV63 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VRK3Q8IV63 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VRK3Q8IV63 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.43■□□□□ 0.86
VRK3Q8IV63 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
VRK3Q8IV63 AC006015.1-201ENST00000429970 570 ntBASIC20.43■□□□□ 0.86
VRK3Q8IV63 PARL-206ENST00000435888 1098 ntTSL 5 BASIC20.43■□□□□ 0.86
VRK3Q8IV63 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VRK3Q8IV63 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VRK3Q8IV63 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.43■□□□□ 0.86
VRK3Q8IV63 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.43■□□□□ 0.86
VRK3Q8IV63 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.43■□□□□ 0.86
VRK3Q8IV63 RARRES2P11-201ENST00000635158 484 ntBASIC20.43■□□□□ 0.86
VRK3Q8IV63 MYCNOS-205ENST00000641950 531 ntBASIC20.43■□□□□ 0.86
VRK3Q8IV63 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VRK3Q8IV63 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VRK3Q8IV63 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VRK3Q8IV63 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
VRK3Q8IV63 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VRK3Q8IV63 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VRK3Q8IV63 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
VRK3Q8IV63 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VRK3Q8IV63 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VRK3Q8IV63 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
VRK3Q8IV63 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.42■□□□□ 0.86
VRK3Q8IV63 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.41■□□□□ 0.86
VRK3Q8IV63 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.5 ms