Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 AC026271.2-201ENST00000428091 497 ntBASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 AC104187.1-201ENST00000607510 612 ntBASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 AC008175.2-201ENST00000612840 297 ntBASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM40Q6P9F5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 HACD1-201ENST00000326961 773 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 AC138907.5-202ENST00000569484 235 ntBASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TRIM40Q6P9F5 AC004854.2-201ENST00000608450 1441 ntBASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 GALNS-213ENST00000569433 723 ntTSL 3 BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 AP004607.4-201ENST00000530158 1459 ntBASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM40Q6P9F5 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
TRIM40Q6P9F5 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC20.02■□□□□ 0.79
TRIM40Q6P9F5 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 KRT19P1-201ENST00000405746 1186 ntBASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 DYM-203ENST00000442713 2147 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 MIR5787-201ENST00000611784 55 ntBASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
TRIM40Q6P9F5 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM40Q6P9F5 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM40Q6P9F5 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM40Q6P9F5 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM40Q6P9F5 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 POU5F1P4-201ENST00000413175 1085 ntBASIC20■□□□□ 0.79
TRIM40Q6P9F5 AC010141.2-201ENST00000452426 721 ntBASIC20■□□□□ 0.79
TRIM40Q6P9F5 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 NTF6G-201ENST00000591094 616 ntBASIC20■□□□□ 0.79
TRIM40Q6P9F5 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20■□□□□ 0.79
TRIM40Q6P9F5 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20■□□□□ 0.79
TRIM40Q6P9F5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
TRIM40Q6P9F5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 AC140479.5-201ENST00000568189 735 ntTSL 3 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
TRIM40Q6P9F5 AC120498.10-201ENST00000621827 505 ntBASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms