Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
ABCA4P78363 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC18.01■□□□□ 0.47
ABCA4P78363 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
ABCA4P78363 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
ABCA4P78363 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC18.01■□□□□ 0.47
ABCA4P78363 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.01■□□□□ 0.47
ABCA4P78363 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC18.01■□□□□ 0.47
ABCA4P78363 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.01■□□□□ 0.47
ABCA4P78363 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
ABCA4P78363 AC026471.6-201ENST00000622954 1905 ntBASIC18.01■□□□□ 0.47
ABCA4P78363 AC073912.3-201ENST00000624414 853 ntBASIC18.01■□□□□ 0.47
ABCA4P78363 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18■□□□□ 0.47
ABCA4P78363 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18■□□□□ 0.47
ABCA4P78363 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA4P78363 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
ABCA4P78363 C11orf96-202ENST00000528572 1834 ntBASIC18■□□□□ 0.47
ABCA4P78363 AC211429.1-201ENST00000415277 523 ntBASIC18■□□□□ 0.47
ABCA4P78363 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC18■□□□□ 0.47
ABCA4P78363 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18■□□□□ 0.47
ABCA4P78363 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA4P78363 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA4P78363 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18■□□□□ 0.47
ABCA4P78363 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
ABCA4P78363 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18■□□□□ 0.47
ABCA4P78363 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18■□□□□ 0.47
ABCA4P78363 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18■□□□□ 0.47
ABCA4P78363 AC073648.6-201ENST00000641589 218 ntBASIC18■□□□□ 0.47
ABCA4P78363 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
ABCA4P78363 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.99■□□□□ 0.47
ABCA4P78363 GXYLT1P3-201ENST00000453058 1193 ntBASIC17.99■□□□□ 0.47
ABCA4P78363 OR2A1-AS1-201ENST00000462305 773 ntBASIC17.99■□□□□ 0.47
ABCA4P78363 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC17.99■□□□□ 0.47
ABCA4P78363 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC17.99■□□□□ 0.47
ABCA4P78363 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
ABCA4P78363 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC17.99■□□□□ 0.47
ABCA4P78363 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
ABCA4P78363 C1orf229-201ENST00000623686 2258 ntBASIC17.98■□□□□ 0.47
ABCA4P78363 MIR718-201ENST00000390190 70 ntBASIC17.98■□□□□ 0.47
ABCA4P78363 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.98■□□□□ 0.47
ABCA4P78363 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.98■□□□□ 0.47
ABCA4P78363 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC17.98■□□□□ 0.47
ABCA4P78363 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC17.98■□□□□ 0.47
ABCA4P78363 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.98■□□□□ 0.47
ABCA4P78363 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC17.98■□□□□ 0.47
ABCA4P78363 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.98■□□□□ 0.47
ABCA4P78363 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
ABCA4P78363 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC17.97■□□□□ 0.47
ABCA4P78363 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ABCA4P78363 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC17.97■□□□□ 0.47
ABCA4P78363 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC17.97■□□□□ 0.47
ABCA4P78363 RHOD-202ENST00000532559 538 ntTSL 3 BASIC17.97■□□□□ 0.47
ABCA4P78363 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC17.97■□□□□ 0.47
ABCA4P78363 AC100791.3-201ENST00000617619 330 ntBASIC17.97■□□□□ 0.47
ABCA4P78363 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC17.97■□□□□ 0.47
ABCA4P78363 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC17.97■□□□□ 0.47
ABCA4P78363 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC17.97■□□□□ 0.47
ABCA4P78363 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
ABCA4P78363 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.97■□□□□ 0.47
ABCA4P78363 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC17.97■□□□□ 0.47
ABCA4P78363 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
ABCA4P78363 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.2 ms