Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC12.26□□□□□ -0.45
RPS28P62857 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC12.26□□□□□ -0.45
RPS28P62857 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC12.26□□□□□ -0.45
RPS28P62857 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC12.26□□□□□ -0.45
RPS28P62857 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC12.26□□□□□ -0.45
RPS28P62857 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC12.26□□□□□ -0.45
RPS28P62857 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.26□□□□□ -0.45
RPS28P62857 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 LINC01960-201ENST00000563759 1884 ntBASIC12.25□□□□□ -0.45
RPS28P62857 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC12.25□□□□□ -0.45
RPS28P62857 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC12.25□□□□□ -0.45
RPS28P62857 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC12.25□□□□□ -0.45
RPS28P62857 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC12.25□□□□□ -0.45
RPS28P62857 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC12.25□□□□□ -0.45
RPS28P62857 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC12.25□□□□□ -0.45
RPS28P62857 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
RPS28P62857 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC12.25□□□□□ -0.45
RPS28P62857 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC12.25□□□□□ -0.45
RPS28P62857 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 ESPN-216ENST00000636330 4731 ntAPPRIS ALT2 TSL 5 BASIC12.25□□□□□ -0.45
RPS28P62857 AL353803.4-201ENST00000565882 1934 ntBASIC12.25□□□□□ -0.45
RPS28P62857 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC12.25□□□□□ -0.45
RPS28P62857 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC12.25□□□□□ -0.45
RPS28P62857 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RPS28P62857 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 POLD2-201ENST00000223361 1597 ntTSL 5 BASIC12.24□□□□□ -0.45
RPS28P62857 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC12.24□□□□□ -0.45
RPS28P62857 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
RPS28P62857 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC12.24□□□□□ -0.45
RPS28P62857 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 NOC2LP2-201ENST00000407594 1944 ntBASIC12.24□□□□□ -0.45
RPS28P62857 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC12.24□□□□□ -0.45
RPS28P62857 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC12.24□□□□□ -0.45
RPS28P62857 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC12.24□□□□□ -0.45
RPS28P62857 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC12.24□□□□□ -0.45
RPS28P62857 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC12.24□□□□□ -0.45
RPS28P62857 AL138781.2-201ENST00000617896 1843 ntBASIC12.24□□□□□ -0.45
RPS28P62857 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC12.24□□□□□ -0.45
RPS28P62857 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC12.24□□□□□ -0.45
RPS28P62857 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC12.24□□□□□ -0.45
RPS28P62857 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC12.24□□□□□ -0.45
RPS28P62857 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC12.23□□□□□ -0.45
RPS28P62857 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
RPS28P62857 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
RPS28P62857 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC12.23□□□□□ -0.45
RPS28P62857 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 AC018470.1-201ENST00000624790 3129 ntBASIC12.23□□□□□ -0.45
RPS28P62857 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
RPS28P62857 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
RPS28P62857 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC12.23□□□□□ -0.45
RPS28P62857 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC12.23□□□□□ -0.45
RPS28P62857 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
RPS28P62857 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms