Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC27.94■■■□□ 2.06
COL18A1P39060 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC27.94■■■□□ 2.06
COL18A1P39060 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC27.94■■■□□ 2.06
COL18A1P39060 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL18A1P39060 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC27.94■■■□□ 2.06
COL18A1P39060 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC27.94■■■□□ 2.06
COL18A1P39060 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC27.94■■■□□ 2.06
COL18A1P39060 CDV3P1-201ENST00000471403 739 ntBASIC27.94■■■□□ 2.06
COL18A1P39060 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC27.94■■■□□ 2.06
COL18A1P39060 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL18A1P39060 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL18A1P39060 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL18A1P39060 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC27.93■■■□□ 2.06
COL18A1P39060 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
COL18A1P39060 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC27.93■■■□□ 2.06
COL18A1P39060 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC27.93■■■□□ 2.06
COL18A1P39060 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL18A1P39060 SOX15-203ENST00000570788 1093 ntBASIC27.93■■■□□ 2.06
COL18A1P39060 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC27.93■■■□□ 2.06
COL18A1P39060 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC27.93■■■□□ 2.06
COL18A1P39060 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC27.93■■■□□ 2.06
COL18A1P39060 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC27.92■■■□□ 2.06
COL18A1P39060 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
COL18A1P39060 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC27.92■■■□□ 2.06
COL18A1P39060 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC27.92■■■□□ 2.06
COL18A1P39060 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC27.92■■■□□ 2.06
COL18A1P39060 AL589743.5-201ENST00000616611 1050 ntBASIC27.92■■■□□ 2.06
COL18A1P39060 AC105020.6-201ENST00000621523 1217 ntBASIC27.92■■■□□ 2.06
COL18A1P39060 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC27.92■■■□□ 2.06
COL18A1P39060 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC27.92■■■□□ 2.06
COL18A1P39060 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC27.92■■■□□ 2.06
COL18A1P39060 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC27.92■■■□□ 2.06
COL18A1P39060 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC27.91■■■□□ 2.06
COL18A1P39060 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC27.91■■■□□ 2.06
COL18A1P39060 MDFI-202ENST00000373050 809 ntTSL 2 BASIC27.91■■■□□ 2.06
COL18A1P39060 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC27.91■■■□□ 2.06
COL18A1P39060 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC27.91■■■□□ 2.06
COL18A1P39060 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC27.91■■■□□ 2.06
COL18A1P39060 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC27.91■■■□□ 2.06
COL18A1P39060 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC27.91■■■□□ 2.06
COL18A1P39060 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC27.91■■■□□ 2.06
COL18A1P39060 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC27.91■■■□□ 2.06
COL18A1P39060 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC27.9■■■□□ 2.06
COL18A1P39060 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC27.9■■■□□ 2.06
COL18A1P39060 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC27.9■■■□□ 2.06
COL18A1P39060 PTPA-214ENST00000423100 988 ntTSL 2 BASIC27.9■■■□□ 2.06
COL18A1P39060 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC27.9■■■□□ 2.06
COL18A1P39060 AC068473.5-201ENST00000616428 2072 ntBASIC27.89■■■□□ 2.06
COL18A1P39060 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
COL18A1P39060 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC27.89■■■□□ 2.06
COL18A1P39060 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC27.89■■■□□ 2.06
COL18A1P39060 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC27.89■■■□□ 2.06
COL18A1P39060 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC27.89■■■□□ 2.06
COL18A1P39060 AC073912.3-201ENST00000624414 853 ntBASIC27.89■■■□□ 2.06
COL18A1P39060 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC27.89■■■□□ 2.05
COL18A1P39060 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC27.89■■■□□ 2.05
COL18A1P39060 KRT17P3-201ENST00000420566 1262 ntBASIC27.88■■■□□ 2.05
COL18A1P39060 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC27.88■■■□□ 2.05
COL18A1P39060 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC27.88■■■□□ 2.05
COL18A1P39060 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC27.88■■■□□ 2.05
COL18A1P39060 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC27.88■■■□□ 2.05
COL18A1P39060 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC27.88■■■□□ 2.05
COL18A1P39060 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC27.88■■■□□ 2.05
COL18A1P39060 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC27.88■■■□□ 2.05
COL18A1P39060 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL18A1P39060 POM121L13P-201ENST00000422362 380 ntBASIC27.88■■■□□ 2.05
COL18A1P39060 AC012618.2-201ENST00000428058 849 ntBASIC27.88■■■□□ 2.05
COL18A1P39060 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC27.88■■■□□ 2.05
COL18A1P39060 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC27.88■■■□□ 2.05
COL18A1P39060 Z99916.2-201ENST00000604037 246 ntBASIC27.88■■■□□ 2.05
COL18A1P39060 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC27.88■■■□□ 2.05
COL18A1P39060 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC27.87■■■□□ 2.05
COL18A1P39060 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC27.87■■■□□ 2.05
COL18A1P39060 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL18A1P39060 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC27.87■■■□□ 2.05
COL18A1P39060 PKM-204ENST00000449901 2526 ntTSL 2 BASIC27.87■■■□□ 2.05
COL18A1P39060 CYP21A1P-202ENST00000354927 1481 ntBASIC27.87■■■□□ 2.05
COL18A1P39060 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC27.87■■■□□ 2.05
COL18A1P39060 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC27.87■■■□□ 2.05
COL18A1P39060 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC27.86■■■□□ 2.05
COL18A1P39060 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC27.86■■■□□ 2.05
COL18A1P39060 MIR718-201ENST00000390190 70 ntBASIC27.86■■■□□ 2.05
COL18A1P39060 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC27.86■■■□□ 2.05
COL18A1P39060 GXYLT1P3-201ENST00000453058 1193 ntBASIC27.86■■■□□ 2.05
COL18A1P39060 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC27.86■■■□□ 2.05
COL18A1P39060 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC27.86■■■□□ 2.05
COL18A1P39060 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC27.86■■■□□ 2.05
COL18A1P39060 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC27.86■■■□□ 2.05
COL18A1P39060 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
COL18A1P39060 SNORA78-201ENST00000459373 127 ntBASIC27.86■■■□□ 2.05
COL18A1P39060 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC27.86■■■□□ 2.05
COL18A1P39060 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC27.86■■■□□ 2.05
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms