Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DMBP28068 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC15.89■□□□□ 0.13
HLA-DMBP28068 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HLA-DMBP28068 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HLA-DMBP28068 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HLA-DMBP28068 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 NARF-205ENST00000412079 1760 ntTSL 5 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 TSPY26P-201ENST00000476365 1326 ntBASIC15.88■□□□□ 0.13
HLA-DMBP28068 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HLA-DMBP28068 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC15.88■□□□□ 0.13
HLA-DMBP28068 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 GRAMD4P2-201ENST00000423297 1097 ntBASIC15.87■□□□□ 0.13
HLA-DMBP28068 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HLA-DMBP28068 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC15.87■□□□□ 0.13
HLA-DMBP28068 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 AC105233.4-201ENST00000642045 216 ntBASIC15.86■□□□□ 0.13
HLA-DMBP28068 AC092667.1-201ENST00000434301 2586 ntBASIC15.86■□□□□ 0.13
HLA-DMBP28068 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
HLA-DMBP28068 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
HLA-DMBP28068 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 STX5-203ENST00000394690 1568 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
HLA-DMBP28068 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC15.85■□□□□ 0.13
HLA-DMBP28068 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DMBP28068 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DMBP28068 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms