Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A1P20908 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A1P20908 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A1P20908 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC20.24■□□□□ 0.83
COL5A1P20908 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.24■□□□□ 0.83
COL5A1P20908 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A1P20908 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A1P20908 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A1P20908 MCRIP2P1-201ENST00000394346 511 ntBASIC20.24■□□□□ 0.83
COL5A1P20908 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
COL5A1P20908 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A1P20908 CDV3P1-201ENST00000471403 739 ntBASIC20.24■□□□□ 0.83
COL5A1P20908 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.24■□□□□ 0.83
COL5A1P20908 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.24■□□□□ 0.83
COL5A1P20908 AC069544.1-201ENST00000609399 999 ntBASIC20.24■□□□□ 0.83
COL5A1P20908 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.24■□□□□ 0.83
COL5A1P20908 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL5A1P20908 AC003102.1-202ENST00000563394 1796 ntBASIC20.23■□□□□ 0.83
COL5A1P20908 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.23■□□□□ 0.83
COL5A1P20908 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
COL5A1P20908 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 AC245052.3-201ENST00000450182 901 ntBASIC20.23■□□□□ 0.83
COL5A1P20908 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
COL5A1P20908 AC012676.1-201ENST00000574705 1949 ntBASIC20.23■□□□□ 0.83
COL5A1P20908 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC20.23■□□□□ 0.83
COL5A1P20908 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.23■□□□□ 0.83
COL5A1P20908 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.23■□□□□ 0.83
COL5A1P20908 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL5A1P20908 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
COL5A1P20908 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A1P20908 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.22■□□□□ 0.83
COL5A1P20908 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL5A1P20908 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A1P20908 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC20.22■□□□□ 0.83
COL5A1P20908 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL5A1P20908 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
COL5A1P20908 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A1P20908 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
COL5A1P20908 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC20.21■□□□□ 0.83
COL5A1P20908 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A1P20908 AC007322.3-201ENST00000426526 701 ntBASIC20.21■□□□□ 0.83
COL5A1P20908 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A1P20908 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A1P20908 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A1P20908 MIR4497-201ENST00000583208 89 ntBASIC20.21■□□□□ 0.83
COL5A1P20908 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
COL5A1P20908 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A1P20908 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL5A1P20908 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.21■□□□□ 0.83
COL5A1P20908 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC20.21■□□□□ 0.83
COL5A1P20908 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
COL5A1P20908 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.2■□□□□ 0.82
COL5A1P20908 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 MIR718-201ENST00000390190 70 ntBASIC20.2■□□□□ 0.82
COL5A1P20908 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.2■□□□□ 0.82
COL5A1P20908 KRT17P3-201ENST00000420566 1262 ntBASIC20.2■□□□□ 0.82
COL5A1P20908 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.2■□□□□ 0.82
COL5A1P20908 RPPH1-201ENST00000516869 333 ntBASIC20.2■□□□□ 0.82
COL5A1P20908 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL5A1P20908 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC20.2■□□□□ 0.82
COL5A1P20908 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.2■□□□□ 0.82
COL5A1P20908 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COL5A1P20908 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC20.2■□□□□ 0.82
COL5A1P20908 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 C1orf229-201ENST00000623686 2258 ntBASIC20.2■□□□□ 0.82
COL5A1P20908 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.2■□□□□ 0.82
COL5A1P20908 C1QBPP2-201ENST00000528754 825 ntBASIC20.2■□□□□ 0.82
COL5A1P20908 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 AC092368.3-202ENST00000574180 1591 ntBASIC20.2■□□□□ 0.82
COL5A1P20908 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL5A1P20908 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.19■□□□□ 0.82
COL5A1P20908 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC20.19■□□□□ 0.82
COL5A1P20908 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.19■□□□□ 0.82
COL5A1P20908 AL589743.5-201ENST00000616611 1050 ntBASIC20.19■□□□□ 0.82
COL5A1P20908 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL5A1P20908 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.19■□□□□ 0.82
COL5A1P20908 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL5A1P20908 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
COL5A1P20908 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
COL5A1P20908 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms