Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
MSH3P20585 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH3P20585 STX7-201ENST00000367937 1090 ntTSL 5 BASIC20.79■□□□□ 0.92
MSH3P20585 AC016769.1-201ENST00000409132 1010 ntBASIC20.79■□□□□ 0.92
MSH3P20585 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH3P20585 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH3P20585 KRT18P20-201ENST00000548986 1279 ntBASIC20.79■□□□□ 0.92
MSH3P20585 AC022517.1-201ENST00000592429 346 ntBASIC20.79■□□□□ 0.92
MSH3P20585 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 AC061975.6-201ENST00000579045 1553 ntBASIC20.79■□□□□ 0.92
MSH3P20585 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
MSH3P20585 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.79■□□□□ 0.92
MSH3P20585 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.79■□□□□ 0.92
MSH3P20585 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.79■□□□□ 0.92
MSH3P20585 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.79■□□□□ 0.92
MSH3P20585 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.79■□□□□ 0.92
MSH3P20585 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH3P20585 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 AL137060.1-201ENST00000618151 2648 ntBASIC20.78■□□□□ 0.92
MSH3P20585 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
MSH3P20585 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.78■□□□□ 0.92
MSH3P20585 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
MSH3P20585 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC20.77■□□□□ 0.92
MSH3P20585 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.77■□□□□ 0.92
MSH3P20585 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
MSH3P20585 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH3P20585 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.77■□□□□ 0.92
MSH3P20585 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH3P20585 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC20.77■□□□□ 0.92
MSH3P20585 Z98882.1-201ENST00000622160 2253 ntBASIC20.77■□□□□ 0.92
MSH3P20585 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH3P20585 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
MSH3P20585 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.77■□□□□ 0.92
MSH3P20585 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.77■□□□□ 0.92
MSH3P20585 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MSH3P20585 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
MSH3P20585 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.76■□□□□ 0.91
MSH3P20585 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.76■□□□□ 0.91
MSH3P20585 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
MSH3P20585 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 KRT18P11-201ENST00000435214 1283 ntBASIC20.76■□□□□ 0.91
MSH3P20585 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC20.76■□□□□ 0.91
MSH3P20585 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.76■□□□□ 0.91
MSH3P20585 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
MSH3P20585 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH3P20585 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
MSH3P20585 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.75■□□□□ 0.91
MSH3P20585 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH3P20585 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.75■□□□□ 0.91
MSH3P20585 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
MSH3P20585 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.75■□□□□ 0.91
MSH3P20585 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC20.75■□□□□ 0.91
MSH3P20585 SLC7A5P2-201ENST00000553010 536 ntBASIC20.75■□□□□ 0.91
MSH3P20585 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH3P20585 UBE2DNL-204ENST00000602536 740 ntBASIC20.75■□□□□ 0.91
MSH3P20585 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.75■□□□□ 0.91
MSH3P20585 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.75■□□□□ 0.91
MSH3P20585 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH3P20585 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC20.75■□□□□ 0.91
MSH3P20585 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
MSH3P20585 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH3P20585 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
MSH3P20585 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.75■□□□□ 0.91
MSH3P20585 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH3P20585 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH3P20585 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
MSH3P20585 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms