Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 ANKRD17-211ENST00000639793 3486 ntTSL 5 BASIC17.36■□□□□ 0.37
ATF4P18848 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 NAXE-203ENST00000368235 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC17.36■□□□□ 0.37
ATF4P18848 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 GAK-223ENST00000628912 497 ntTSL 5 BASIC17.36■□□□□ 0.37
ATF4P18848 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC17.36■□□□□ 0.37
ATF4P18848 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.36■□□□□ 0.37
ATF4P18848 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC17.36■□□□□ 0.37
ATF4P18848 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
ATF4P18848 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC17.35■□□□□ 0.37
ATF4P18848 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC17.35■□□□□ 0.37
ATF4P18848 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC17.35■□□□□ 0.37
ATF4P18848 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC17.35■□□□□ 0.37
ATF4P18848 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC17.35■□□□□ 0.37
ATF4P18848 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC17.35■□□□□ 0.37
ATF4P18848 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.35■□□□□ 0.37
ATF4P18848 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
ATF4P18848 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC17.35■□□□□ 0.37
ATF4P18848 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.34■□□□□ 0.37
ATF4P18848 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC17.34■□□□□ 0.37
ATF4P18848 AC009299.2-201ENST00000482477 511 ntBASIC17.34■□□□□ 0.37
ATF4P18848 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ATF4P18848 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC17.34■□□□□ 0.37
ATF4P18848 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC17.34■□□□□ 0.37
ATF4P18848 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC17.34■□□□□ 0.37
ATF4P18848 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
ATF4P18848 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
ATF4P18848 NOC2LP1-202ENST00000452600 2235 ntBASIC17.33■□□□□ 0.37
ATF4P18848 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ATF4P18848 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ATF4P18848 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC17.33■□□□□ 0.37
ATF4P18848 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.33■□□□□ 0.37
ATF4P18848 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC17.33■□□□□ 0.37
ATF4P18848 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.33■□□□□ 0.37
ATF4P18848 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.37
ATF4P18848 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ATF4P18848 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.37
ATF4P18848 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
ATF4P18848 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
ATF4P18848 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC17.33■□□□□ 0.36
ATF4P18848 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 HES6-204ENST00000409182 863 ntTSL 2 BASIC17.33■□□□□ 0.36
ATF4P18848 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC17.33■□□□□ 0.36
ATF4P18848 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 PVT1_1.1-201ENST00000615125 194 ntBASIC17.33■□□□□ 0.36
ATF4P18848 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC17.33■□□□□ 0.36
ATF4P18848 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
ATF4P18848 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.33■□□□□ 0.36
ATF4P18848 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC17.33■□□□□ 0.36
ATF4P18848 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
ATF4P18848 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.33■□□□□ 0.36
ATF4P18848 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
ATF4P18848 ALDH1A3-203ENST00000557963 1670 ntBASIC17.32■□□□□ 0.36
ATF4P18848 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.32■□□□□ 0.36
ATF4P18848 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
ATF4P18848 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms