Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.65■□□□□ 0.9
COL6A2P12110 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL6A2P12110 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A2P12110 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A2P12110 RNF146-206ENST00000480444 843 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A2P12110 AC027682.1-201ENST00000562846 899 ntBASIC20.65■□□□□ 0.9
COL6A2P12110 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.65■□□□□ 0.9
COL6A2P12110 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
COL6A2P12110 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC20.65■□□□□ 0.9
COL6A2P12110 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.65■□□□□ 0.9
COL6A2P12110 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
COL6A2P12110 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.65■□□□□ 0.9
COL6A2P12110 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A2P12110 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.64■□□□□ 0.9
COL6A2P12110 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A2P12110 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
COL6A2P12110 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 AC099791.1-201ENST00000416440 715 ntBASIC20.64■□□□□ 0.89
COL6A2P12110 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC20.64■□□□□ 0.89
COL6A2P12110 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.64■□□□□ 0.89
COL6A2P12110 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
COL6A2P12110 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC20.64■□□□□ 0.89
COL6A2P12110 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL6A2P12110 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A2P12110 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A2P12110 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A2P12110 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
COL6A2P12110 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A2P12110 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
COL6A2P12110 TSPY26P-201ENST00000476365 1326 ntBASIC20.63■□□□□ 0.89
COL6A2P12110 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A2P12110 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A2P12110 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.63■□□□□ 0.89
COL6A2P12110 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A2P12110 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A2P12110 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A2P12110 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A2P12110 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC20.63■□□□□ 0.89
COL6A2P12110 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A2P12110 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC20.63■□□□□ 0.89
COL6A2P12110 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
COL6A2P12110 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL6A2P12110 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
COL6A2P12110 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.62■□□□□ 0.89
COL6A2P12110 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
COL6A2P12110 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.62■□□□□ 0.89
COL6A2P12110 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.62■□□□□ 0.89
COL6A2P12110 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC20.62■□□□□ 0.89
COL6A2P12110 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC20.62■□□□□ 0.89
COL6A2P12110 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.62■□□□□ 0.89
COL6A2P12110 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 AL391422.3-201ENST00000603791 2761 ntBASIC20.62■□□□□ 0.89
COL6A2P12110 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL6A2P12110 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
COL6A2P12110 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.61■□□□□ 0.89
COL6A2P12110 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A2P12110 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.61■□□□□ 0.89
COL6A2P12110 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A2P12110 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A2P12110 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A2P12110 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.61■□□□□ 0.89
COL6A2P12110 MIR572-201ENST00000384983 95 ntBASIC20.61■□□□□ 0.89
COL6A2P12110 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.61■□□□□ 0.89
COL6A2P12110 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC20.61■□□□□ 0.89
COL6A2P12110 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A2P12110 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
COL6A2P12110 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A2P12110 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.61■□□□□ 0.89
COL6A2P12110 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL6A2P12110 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.6■□□□□ 0.89
COL6A2P12110 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 EDA-201ENST00000338901 1233 ntBASIC20.6■□□□□ 0.89
COL6A2P12110 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.6■□□□□ 0.89
COL6A2P12110 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.6■□□□□ 0.89
COL6A2P12110 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
COL6A2P12110 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.6■□□□□ 0.89
COL6A2P12110 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL6A2P12110 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL6A2P12110 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms