Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC24.68■■□□□ 1.54
HMGB1P09429 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC24.68■■□□□ 1.54
HMGB1P09429 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC24.68■■□□□ 1.54
HMGB1P09429 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC24.68■■□□□ 1.54
HMGB1P09429 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC24.68■■□□□ 1.54
HMGB1P09429 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
HMGB1P09429 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC24.67■■□□□ 1.54
HMGB1P09429 NAA20-201ENST00000310450 920 ntTSL 2 BASIC24.67■■□□□ 1.54
HMGB1P09429 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
HMGB1P09429 KRT18P20-201ENST00000548986 1279 ntBASIC24.67■■□□□ 1.54
HMGB1P09429 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC24.67■■□□□ 1.54
HMGB1P09429 AC004854.2-201ENST00000608450 1441 ntBASIC24.67■■□□□ 1.54
HMGB1P09429 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24.67■■□□□ 1.54
HMGB1P09429 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC24.67■■□□□ 1.54
HMGB1P09429 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC24.66■■□□□ 1.54
HMGB1P09429 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
HMGB1P09429 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC24.66■■□□□ 1.54
HMGB1P09429 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC24.66■■□□□ 1.54
HMGB1P09429 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC24.66■■□□□ 1.54
HMGB1P09429 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC24.66■■□□□ 1.54
HMGB1P09429 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC24.65■■□□□ 1.54
HMGB1P09429 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGB1P09429 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC24.65■■□□□ 1.54
HMGB1P09429 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC24.65■■□□□ 1.54
HMGB1P09429 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC24.65■■□□□ 1.54
HMGB1P09429 MIR6821-201ENST00000617625 74 ntBASIC24.65■■□□□ 1.54
HMGB1P09429 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC24.65■■□□□ 1.54
HMGB1P09429 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC24.65■■□□□ 1.54
HMGB1P09429 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC24.64■■□□□ 1.54
HMGB1P09429 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC24.64■■□□□ 1.54
HMGB1P09429 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.54
HMGB1P09429 KRT19P1-201ENST00000405746 1186 ntBASIC24.64■■□□□ 1.54
HMGB1P09429 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.64■■□□□ 1.53
HMGB1P09429 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC24.64■■□□□ 1.53
HMGB1P09429 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC24.64■■□□□ 1.53
HMGB1P09429 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC24.64■■□□□ 1.53
HMGB1P09429 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC24.63■■□□□ 1.53
HMGB1P09429 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
HMGB1P09429 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC24.63■■□□□ 1.53
HMGB1P09429 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
HMGB1P09429 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC24.63■■□□□ 1.53
HMGB1P09429 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC24.63■■□□□ 1.53
HMGB1P09429 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC24.63■■□□□ 1.53
HMGB1P09429 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC24.63■■□□□ 1.53
HMGB1P09429 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC24.63■■□□□ 1.53
HMGB1P09429 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC24.63■■□□□ 1.53
HMGB1P09429 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC24.63■■□□□ 1.53
HMGB1P09429 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC24.62■■□□□ 1.53
HMGB1P09429 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGB1P09429 AC034268.1-201ENST00000441047 882 ntBASIC24.62■■□□□ 1.53
HMGB1P09429 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC24.62■■□□□ 1.53
HMGB1P09429 GALNS-213ENST00000569433 723 ntTSL 3 BASIC24.62■■□□□ 1.53
HMGB1P09429 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGB1P09429 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGB1P09429 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGB1P09429 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC24.62■■□□□ 1.53
HMGB1P09429 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC24.62■■□□□ 1.53
HMGB1P09429 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC24.61■■□□□ 1.53
HMGB1P09429 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
HMGB1P09429 EXOC3-AS1-202ENST00000623673 1663 ntBASIC24.6■■□□□ 1.53
HMGB1P09429 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGB1P09429 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGB1P09429 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC24.6■■□□□ 1.53
HMGB1P09429 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC24.6■■□□□ 1.53
HMGB1P09429 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC24.6■■□□□ 1.53
HMGB1P09429 PLD4-205ENST00000553861 667 ntTSL 2 BASIC24.6■■□□□ 1.53
HMGB1P09429 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC24.6■■□□□ 1.53
HMGB1P09429 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGB1P09429 AC121338.2-201ENST00000622535 1744 ntBASIC24.6■■□□□ 1.53
HMGB1P09429 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGB1P09429 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC24.6■■□□□ 1.53
HMGB1P09429 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
HMGB1P09429 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC24.59■■□□□ 1.53
HMGB1P09429 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
HMGB1P09429 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms