Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.48■□□□□ 0.87
TNFP01375 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
TNFP01375 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.48■□□□□ 0.87
TNFP01375 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
TNFP01375 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TNFP01375 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TNFP01375 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TNFP01375 AC010980.2-201ENST00000587099 1412 ntBASIC20.47■□□□□ 0.87
TNFP01375 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TNFP01375 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TNFP01375 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.47■□□□□ 0.87
TNFP01375 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.47■□□□□ 0.87
TNFP01375 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TNFP01375 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC20.47■□□□□ 0.87
TNFP01375 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
TNFP01375 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.47■□□□□ 0.87
TNFP01375 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TNFP01375 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
TNFP01375 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 CASP6-205ENST00000505486 538 ntTSL 4 BASIC20.46■□□□□ 0.87
TNFP01375 AC098934.4-201ENST00000564127 592 ntBASIC20.46■□□□□ 0.87
TNFP01375 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC20.46■□□□□ 0.87
TNFP01375 AC092118.2-201ENST00000613495 667 ntBASIC20.46■□□□□ 0.87
TNFP01375 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.46■□□□□ 0.87
TNFP01375 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TNFP01375 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.46■□□□□ 0.87
TNFP01375 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.46■□□□□ 0.87
TNFP01375 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC20.46■□□□□ 0.87
TNFP01375 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.46■□□□□ 0.87
TNFP01375 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
TNFP01375 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.45■□□□□ 0.86
TNFP01375 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 FAM21FP-204ENST00000608637 956 ntBASIC20.45■□□□□ 0.86
TNFP01375 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 C16orf58-209ENST00000567994 1845 ntTSL 5 BASIC20.45■□□□□ 0.86
TNFP01375 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC20.45■□□□□ 0.86
TNFP01375 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
TNFP01375 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TNFP01375 ECEL1P1-201ENST00000373592 1742 ntBASIC20.44■□□□□ 0.86
TNFP01375 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC20.44■□□□□ 0.86
TNFP01375 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.44■□□□□ 0.86
TNFP01375 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TNFP01375 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TNFP01375 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
TNFP01375 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.43■□□□□ 0.86
TNFP01375 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.43■□□□□ 0.86
TNFP01375 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.43■□□□□ 0.86
TNFP01375 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.43■□□□□ 0.86
TNFP01375 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.43■□□□□ 0.86
TNFP01375 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.43■□□□□ 0.86
TNFP01375 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC20.43■□□□□ 0.86
TNFP01375 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
TNFP01375 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
TNFP01375 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TNFP01375 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TNFP01375 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC20.42■□□□□ 0.86
TNFP01375 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
TNFP01375 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TNFP01375 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC20.42■□□□□ 0.86
TNFP01375 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
TNFP01375 ABHD17AP1-201ENST00000358206 933 ntBASIC20.42■□□□□ 0.86
TNFP01375 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.42■□□□□ 0.86
TNFP01375 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
TNFP01375 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.42■□□□□ 0.86
TNFP01375 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.42■□□□□ 0.86
TNFP01375 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.42■□□□□ 0.86
TNFP01375 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms