Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
NPHP1O15259 GATS-209ENST00000454084 1030 ntTSL 3 BASIC26.35■■□□□ 1.81
NPHP1O15259 CD44-222ENST00000526025 1052 ntTSL 2 BASIC26.35■■□□□ 1.81
NPHP1O15259 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP1O15259 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC26.35■■□□□ 1.81
NPHP1O15259 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC26.35■■□□□ 1.81
NPHP1O15259 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC26.35■■□□□ 1.81
NPHP1O15259 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP1O15259 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP1O15259 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC26.35■■□□□ 1.81
NPHP1O15259 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
NPHP1O15259 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC26.34■■□□□ 1.81
NPHP1O15259 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP1O15259 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC26.34■■□□□ 1.81
NPHP1O15259 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC26.34■■□□□ 1.81
NPHP1O15259 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP1O15259 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP1O15259 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC26.34■■□□□ 1.81
NPHP1O15259 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC26.34■■□□□ 1.81
NPHP1O15259 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC26.34■■□□□ 1.81
NPHP1O15259 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
NPHP1O15259 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC26.34■■□□□ 1.81
NPHP1O15259 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC26.34■■□□□ 1.81
NPHP1O15259 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC26.33■■□□□ 1.81
NPHP1O15259 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP1O15259 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP1O15259 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP1O15259 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP1O15259 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP1O15259 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
NPHP1O15259 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC26.33■■□□□ 1.8
NPHP1O15259 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.8
NPHP1O15259 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC26.32■■□□□ 1.8
NPHP1O15259 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
NPHP1O15259 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP1O15259 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC26.32■■□□□ 1.8
NPHP1O15259 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
NPHP1O15259 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC26.32■■□□□ 1.8
NPHP1O15259 CDV3P1-201ENST00000471403 739 ntBASIC26.32■■□□□ 1.8
NPHP1O15259 KRT17P1-201ENST00000399211 1546 ntBASIC26.32■■□□□ 1.8
NPHP1O15259 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP1O15259 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP1O15259 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP1O15259 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
NPHP1O15259 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
NPHP1O15259 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC26.32■■□□□ 1.8
NPHP1O15259 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP1O15259 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP1O15259 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP1O15259 AC003102.1-202ENST00000563394 1796 ntBASIC26.31■■□□□ 1.8
NPHP1O15259 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP1O15259 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
NPHP1O15259 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP1O15259 COMT-203ENST00000403184 2217 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP1O15259 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP1O15259 GCA-201ENST00000233612 1694 ntTSL 2 BASIC26.31■■□□□ 1.8
NPHP1O15259 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
NPHP1O15259 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
NPHP1O15259 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
NPHP1O15259 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP1O15259 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP1O15259 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP1O15259 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP1O15259 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP1O15259 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP1O15259 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC26.3■■□□□ 1.8
NPHP1O15259 AC245052.3-201ENST00000450182 901 ntBASIC26.3■■□□□ 1.8
NPHP1O15259 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC26.3■■□□□ 1.8
NPHP1O15259 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC26.3■■□□□ 1.8
NPHP1O15259 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP1O15259 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
NPHP1O15259 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
NPHP1O15259 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC26.29■■□□□ 1.8
NPHP1O15259 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
NPHP1O15259 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC26.29■■□□□ 1.8
NPHP1O15259 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP1O15259 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP1O15259 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP1O15259 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC26.29■■□□□ 1.8
NPHP1O15259 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC26.29■■□□□ 1.8
NPHP1O15259 USP36-216ENST00000589424 970 ntTSL 5 BASIC26.29■■□□□ 1.8
NPHP1O15259 FAM197Y4-202ENST00000622692 608 ntBASIC26.29■■□□□ 1.8
NPHP1O15259 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP1O15259 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP1O15259 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.29■■□□□ 1.8
NPHP1O15259 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
NPHP1O15259 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC26.29■■□□□ 1.8
NPHP1O15259 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
NPHP1O15259 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26.29■■□□□ 1.8
NPHP1O15259 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP1O15259 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
NPHP1O15259 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP1O15259 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
NPHP1O15259 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC26.28■■□□□ 1.8
NPHP1O15259 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP1O15259 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP1O15259 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
NPHP1O15259 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC26.28■■□□□ 1.8
NPHP1O15259 NME6-213ENST00000451657 871 ntTSL 2 BASIC26.28■■□□□ 1.8
NPHP1O15259 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms