Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 NME4-202ENST00000382940 766 ntTSL 3 BASIC19.46■□□□□ 0.71
HMGN4O00479 NME4-211ENST00000620944 1193 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGN4O00479 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.46■□□□□ 0.71
HMGN4O00479 FEM1AP1-201ENST00000431297 1995 ntBASIC19.46■□□□□ 0.71
HMGN4O00479 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
HMGN4O00479 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
HMGN4O00479 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HMGN4O00479 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC19.46■□□□□ 0.71
HMGN4O00479 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
HMGN4O00479 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGN4O00479 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HMGN4O00479 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGN4O00479 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGN4O00479 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
HMGN4O00479 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGN4O00479 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HMGN4O00479 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGN4O00479 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGN4O00479 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.45■□□□□ 0.7
HMGN4O00479 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
HMGN4O00479 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGN4O00479 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC19.45■□□□□ 0.7
HMGN4O00479 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
HMGN4O00479 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
HMGN4O00479 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC19.45■□□□□ 0.7
HMGN4O00479 LINC01521-201ENST00000504184 1943 ntBASIC19.45■□□□□ 0.7
HMGN4O00479 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HMGN4O00479 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
HMGN4O00479 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGN4O00479 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGN4O00479 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGN4O00479 AC073130.3-201ENST00000624389 2278 ntBASIC19.44■□□□□ 0.7
HMGN4O00479 ME2-216ENST00000639850 2331 ntTSL 5 BASIC19.44■□□□□ 0.7
HMGN4O00479 IRS3P-201ENST00000223076 1006 ntBASIC19.44■□□□□ 0.7
HMGN4O00479 AC105265.2-201ENST00000467189 838 ntBASIC19.44■□□□□ 0.7
HMGN4O00479 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.44■□□□□ 0.7
HMGN4O00479 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGN4O00479 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.44■□□□□ 0.7
HMGN4O00479 AC121338.2-201ENST00000622535 1744 ntBASIC19.44■□□□□ 0.7
HMGN4O00479 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC19.44■□□□□ 0.7
HMGN4O00479 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.44■□□□□ 0.7
HMGN4O00479 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
HMGN4O00479 AC061975.6-201ENST00000579045 1553 ntBASIC19.44■□□□□ 0.7
HMGN4O00479 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HMGN4O00479 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGN4O00479 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
HMGN4O00479 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGN4O00479 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 LINC01006-201ENST00000333319 2292 ntBASIC19.43■□□□□ 0.7
HMGN4O00479 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
HMGN4O00479 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.43■□□□□ 0.7
HMGN4O00479 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGN4O00479 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
HMGN4O00479 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.43■□□□□ 0.7
HMGN4O00479 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.43■□□□□ 0.7
HMGN4O00479 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
HMGN4O00479 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGN4O00479 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGN4O00479 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGN4O00479 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.42■□□□□ 0.7
HMGN4O00479 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGN4O00479 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.42■□□□□ 0.7
HMGN4O00479 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGN4O00479 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
HMGN4O00479 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
HMGN4O00479 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGN4O00479 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
HMGN4O00479 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
HMGN4O00479 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.42■□□□□ 0.7
HMGN4O00479 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
HMGN4O00479 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
HMGN4O00479 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
HMGN4O00479 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
HMGN4O00479 AC079140.4-201ENST00000507448 529 ntBASIC19.41■□□□□ 0.7
HMGN4O00479 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.41■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms