Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC16.48■□□□□ 0.23
COL6A5A8TX70 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC16.48■□□□□ 0.23
COL6A5A8TX70 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A5A8TX70 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
COL6A5A8TX70 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC16.48■□□□□ 0.23
COL6A5A8TX70 AC243732.1-201ENST00000612648 864 ntBASIC16.48■□□□□ 0.23
COL6A5A8TX70 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
COL6A5A8TX70 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC16.48■□□□□ 0.23
COL6A5A8TX70 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
COL6A5A8TX70 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC16.47■□□□□ 0.23
COL6A5A8TX70 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC16.47■□□□□ 0.23
COL6A5A8TX70 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
COL6A5A8TX70 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
COL6A5A8TX70 AC145676.1-201ENST00000514988 2004 ntBASIC16.47■□□□□ 0.23
COL6A5A8TX70 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A5A8TX70 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 MFF-205ENST00000354503 1085 ntTSL 2 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A5A8TX70 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 AC006557.6-201ENST00000623071 864 ntBASIC16.46■□□□□ 0.23
COL6A5A8TX70 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
COL6A5A8TX70 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
COL6A5A8TX70 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC16.46■□□□□ 0.22
COL6A5A8TX70 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A5A8TX70 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A5A8TX70 MIEN1-201ENST00000394231 1006 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A5A8TX70 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.22
COL6A5A8TX70 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC16.46■□□□□ 0.22
COL6A5A8TX70 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.22
COL6A5A8TX70 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
COL6A5A8TX70 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A5A8TX70 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
COL6A5A8TX70 GCK-205ENST00000437084 1385 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A5A8TX70 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC16.45■□□□□ 0.22
COL6A5A8TX70 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC16.45■□□□□ 0.22
COL6A5A8TX70 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC16.45■□□□□ 0.22
COL6A5A8TX70 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
COL6A5A8TX70 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A5A8TX70 LINC01568-207ENST00000641790 1380 ntBASIC16.44■□□□□ 0.22
COL6A5A8TX70 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
COL6A5A8TX70 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A5A8TX70 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.44■□□□□ 0.22
COL6A5A8TX70 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC16.44■□□□□ 0.22
COL6A5A8TX70 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.44■□□□□ 0.22
COL6A5A8TX70 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
COL6A5A8TX70 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
COL6A5A8TX70 AC053503.5-201ENST00000601508 636 ntBASIC16.44■□□□□ 0.22
COL6A5A8TX70 CRK-204ENST00000574295 1391 ntTSL 5 BASIC16.43■□□□□ 0.22
COL6A5A8TX70 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.43■□□□□ 0.22
COL6A5A8TX70 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 AC009947.2-201ENST00000444014 672 ntBASIC16.43■□□□□ 0.22
COL6A5A8TX70 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 AP006587.3-201ENST00000525742 1516 ntBASIC16.43■□□□□ 0.22
COL6A5A8TX70 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
COL6A5A8TX70 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
COL6A5A8TX70 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms