Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A6A6NMZ7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
COL6A6A6NMZ7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC19.04■□□□□ 0.64
COL6A6A6NMZ7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 AL139125.2-201ENST00000623134 1869 ntBASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
COL6A6A6NMZ7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 AC113410.3-201ENST00000623366 203 ntBASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
COL6A6A6NMZ7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.02■□□□□ 0.63
COL6A6A6NMZ7 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A6A6NMZ7 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
COL6A6A6NMZ7 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC19.02■□□□□ 0.63
COL6A6A6NMZ7 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC19.02■□□□□ 0.63
COL6A6A6NMZ7 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.02■□□□□ 0.63
COL6A6A6NMZ7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 LINC00526-201ENST00000581067 1875 ntBASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC19.01■□□□□ 0.63
COL6A6A6NMZ7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 AC113347.1-201ENST00000413321 391 ntBASIC19■□□□□ 0.63
COL6A6A6NMZ7 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC19■□□□□ 0.63
COL6A6A6NMZ7 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19■□□□□ 0.63
COL6A6A6NMZ7 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL6A6A6NMZ7 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC19■□□□□ 0.63
COL6A6A6NMZ7 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19■□□□□ 0.63
COL6A6A6NMZ7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19■□□□□ 0.63
COL6A6A6NMZ7 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A6A6NMZ7 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 SERF2-207ENST00000409614 582 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 NTF6B-201ENST00000591913 560 ntBASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 AC145285.6-201ENST00000604632 637 ntBASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL6A6A6NMZ7 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms