Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 EDA-201ENST00000338901 1233 ntBASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 AF213884.3-201ENST00000563833 479 ntBASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 AC110285.6-201ENST00000617652 491 ntBASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 AC073130.3-201ENST00000624389 2278 ntBASIC19.26■□□□□ 0.67
CPSF4LA6NMK7 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 AL355001.2-201ENST00000620617 1191 ntBASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 BX005040.4-201ENST00000637145 1518 ntBASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
CPSF4LA6NMK7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 TTYH3-201ENST00000258796 4840 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC19.24■□□□□ 0.67
CPSF4LA6NMK7 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 RASA4CP-201ENST00000424092 1398 ntBASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 MIR572-201ENST00000384983 95 ntBASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.23■□□□□ 0.67
CPSF4LA6NMK7 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 MIR939-201ENST00000401314 82 ntBASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 SLC25A24-204ENST00000569674 2357 ntBASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 ZGPAT-204ENST00000369967 1890 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
CPSF4LA6NMK7 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CPSF4LA6NMK7 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms