Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC16.36■□□□□ 0.21
TRAV1-1A0A0B4J248 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
TRAV1-1A0A0B4J248 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 AL034346.1-201ENST00000568244 1277 ntBASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TRAV1-1A0A0B4J248 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 TCF3P1-201ENST00000423021 1937 ntBASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.33■□□□□ 0.21
TRAV1-1A0A0B4J248 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 IDNK-201ENST00000376417 511 ntTSL 5 BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 TK2-202ENST00000417693 1046 ntTSL 2 BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 AC129492.7-201ENST00000622992 756 ntBASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TRAV1-1A0A0B4J248 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 HYI-213ENST00000583037 1322 ntTSL 5 BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TRAV1-1A0A0B4J248 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms