Protein–RNA interactions for Protein: Q9Y5G4

PCDHGA9, Protocadherin gamma-A9, humanhuman

Known RBP Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA9Q9Y5G4 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 RNA5SP413-201ENST00000516373 109 ntBASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 AC120498.10-201ENST00000621827 505 ntBASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PCDHGA9Q9Y5G4 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHGA9Q9Y5G4 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
PCDHGA9Q9Y5G4 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHGA9Q9Y5G4 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHGA9Q9Y5G4 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
PCDHGA9Q9Y5G4 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PCDHGA9Q9Y5G4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 KRT18P29-201ENST00000397031 1267 ntBASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 AC008687.6-201ENST00000596318 630 ntBASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PCDHGA9Q9Y5G4 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 AC093827.2-201ENST00000512654 315 ntBASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 AC008175.2-201ENST00000612840 297 ntBASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC19.57■□□□□ 0.72
PCDHGA9Q9Y5G4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDHGA9Q9Y5G4 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 POU5F1P4-201ENST00000413175 1085 ntBASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 TMEM263-203ENST00000547242 811 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.55■□□□□ 0.72
PCDHGA9Q9Y5G4 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 AL162412.1-201ENST00000567129 965 ntBASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDHGA9Q9Y5G4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
PCDHGA9Q9Y5G4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHGA9Q9Y5G4 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.53■□□□□ 0.72
PCDHGA9Q9Y5G4 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHGA9Q9Y5G4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHGA9Q9Y5G4 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDHGA9Q9Y5G4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 69.8 ms